Table 4.
Unique in silico restriction endonuclease digestion patterns (5′-3′) of common genes of Lactobacillus strains (other than recA)
| Lactobacillus spp. | Gene | RE | RE digestion patterns |
|---|---|---|---|
| L. amylovorus 30SC | ruvB | AluI | 423·252·220·92·30 |
| L. amylovorus GRL1118 | 408·252·220·92·30·15 | ||
| L. johnsonii DPC 6026 | 561·169·141·108·41 | ||
| L. johnsonii N6 | 366·195·169·141·108·41 | ||
| L. johnsonii NCC 533 | 561·169·108·80·61·41 | ||
| L. paracasei subsp. paracasei 8700.2 | BfuCI | 351·185·128·93·88·63·56·24·18·11 | |
| L. plantarum 16 | 546·262·169·34 | ||
| L. rhamnosus Lc 705 | Taq1 | 344·271·184·171·50·27 | |
| L. delbrueckii subsp. bulgaricus 2038 | dnaA | AluI | 29·386·228·320·96·150·156 |
| L. plantarum subsp. plantarum ST-III | purA | Tru9I | 348·216·173·134·106·86·73·69·52·33 |
| L. plantarum JDM1 | AluI | 574·297·197·196·26 | |
| L. casei LOCK919 | dnaJ | AluI | 84·268·66·330·109·287·20 |
| L. delbrueckii subsp. bulgaricus ATCC BAA-365 | BfuCI | 491·66·147·52·110·141·130 | |
| L. plantarum WCFS1 | CviAII | 112·408·78·545 | |
| L. reuteri DSM 20016 | gyrB | TaqI | 776·461·294·234·190·70 |
| L. reuteri JCM 1112 | AluI | 1041·391·280·238 |
Symbol (·) indicates RE site in the gene sequences