. 2016 Jun 24;16:142. doi: 10.1186/s12870-016-0829-x

Table 6.

Significant markers associated to cane yield and sugar content and their allelic substitution effect (ASE) in the multi-QTL model for the sugarcane GWAS panel

Cane Yield
2009			2010			2011
locus	ASE^a	P- value^b	locus	ASE^a	P- value^b	locus	ASE^a	P- value^b
M155	4.11	0.00859	M120	-8.70	0.00001	M100	8.69	0.00013
M17	5.35	0.00114	M140	9.91	0.00002	M105	-4.78	0.00692
M185	7.18	0.00012	M188	4.19	0.01031	M131	6.36	0.00028
M200	-8.36	0.00001	M189	5.52	0.01048	M145	-4.19	0.02756
M30	-4.41	0.01525	M197	7.29	0.00007	M166	4.17	0.01292
M35	-6.00	0.00464	M59	-4.71	0.00441	M193	-4.71	0.01644
			M72	-8.22	0.00002	M202	8.92	0.00001
						M47	5.51	0.00361
						M98	-7.47	0.00694
						M99	6.65	0.01779
Sugar Content
2009			2010			2011
locus	ASE^a	P- value^b	locus	ASE^a	P- value^b	locus	ASE^a	P- value^b
M147	0.3	0.04552	M103	-0.3	0.00728	M101	-0.53	0.00001
M156	-0.54	0.00011	M124	-0.31	0.00873	M15	0.42	0.00293
M181	0.55	0.00011	M153	0.42	0.01627	M150	-0.22	0.04433
M28	-0.81	0.00005	M171	-0.76	0.0000002	M194	0.29	0.01277
			M177	-0.38	0.00374	M205	-0.38	0.00293
			M183	-0.23	0.06801	M51	0.71	0.00006
			M206	0.33	0.01723	M64	-0.48	0.00017
			M5	0.4	0.00181	M86	0.25	0.02331
			M64	-0.48	0.00003

^aAllele Substitution Effect. Values for cane yield were transformed from Kg plots^-1 to t ha^-1 after of the analysis for a better depiction. Values for Sugar Content are expressed in %. Negative sign indicate that the absence of the marker is the desirable allele

^b P-value of individual markers in the multi-QTL model