Table 7.
Results of alignments of markers associated with cane yield and sugar content with higher value of allelic substitution effect (ASE) in the multi-QTL model for the sugarcane GWAS panel against Sorghum bicolor sequences
| Trait | Marker | DArT sequence size (pb) | BLAST algorithma | Result from alignment with S. bicolor | Identity | Expect | Sorghum chromosome | Accesion N° |
|---|---|---|---|---|---|---|---|---|
| CY 2010 | M140 | 487 | blastn | Sorghum bicolor clone BAC 88 M4, complete sequence | 100/132 (76 %) | 7.00E-18 | 8 | AY661656.1 |
| CY 2011 | M100 | 318 | blastn | Sorghum bicolor putative cytochrome P450-like protein | 73/95 (77 %) | 2.00E-10 | 1 | AF466201.1 |
| SC 2009 | M28 | 470 | dm blast | alpha kafirin | 59/62 (95 %) | 1.00E-19 | unassigned | Y17556.1 |
| SC 2010 | M171 | 711 | m blast | alpha kafirin | 74/86 (86 %) | 5.00E-21 | unassigned | Y17556.1 |
| SC 2011 | M51 | 579 | dm blast | Sorghum bicolor hypothetical protein, mRNA | 74/94 (79 %) | 2.00E-14 | 6 | XM_002448117.1 |
a megablast (m blast), discontiduous mega blast (dm blast) or blastn