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. Author manuscript; available in PMC: 2017 Jul 1.
Published in final edited form as: Methods. 2016 Apr 25;103:99–119. doi: 10.1016/j.ymeth.2016.04.025

Table 1.

Motif Name Motif IDs (RNA 3D Motif Atlas 1.18) Number of
Structures		 Number of
instances
graphic file with name nihms783163t1.jpg HL_18781.9 25 30
graphic file with name nihms783163t2.jpg HL_67042.17, HL_71179.1,
HL_74411.3, HL_33402.8,
HL_48507.3, HL_11547.7,
HL_90506.1, HL_82538.5,
HL_19626.4, HL_86077.4,
HL_48116.3, HL_61547.5,
HL_92706.1, HL_57963.1,
HL_79956.2, HL_70383.1,
HL_08494.1, HL_62564.1,
HL_79038.1, HL_15291.1,
HL_96515.1		 116 460
graphic file with name nihms783163t3.jpg HL_72498.17, HL_97270.8,
HL_24544.6, HL_85534.6,
HL_72543.3, HL_19066.1,
HL_93771.1, HL_96309.1,
HL_86123.2, HL_84888.1,
HL_36151.1		 81 137
graphic file with name nihms783163t4.jpg HL_39895.11, HL_27353.2,
HL_21419.2, HL_15793.1,
HL_21695.1		 38 59
graphic file with name nihms783163t5.jpg HL_74465.7 17 18
graphic file with name nihms783163t6.jpg IL_65553.12, IL_77263.3, IL_34363.4,
IL_28572.5, IL_37053.4, IL_48918.3,
IL_34628.2, IL_37400.1, IL_65137.1,
IL_21254.1, IL_37408.1, IL_59934.1,
IL_68827.1, IL_40527.1, IL_91857.1		 38 70
graphic file with name nihms783163t7.jpg IL_39199.8, IL_67828.2 41 74
graphic file with name nihms783163t8.jpg IL_44540.8, IL_67828.2 33 62
graphic file with name nihms783163t9.jpg IL_37976.1, IL_68859.1, IL_93568.6 26 67
graphic file with name nihms783163t10.jpg IL_13959.8 22 39
graphic file with name nihms783163t11.jpg IL_55938.8 15 27
Tandem sheared with
bulged base(s)
graphic file with name nihms783163t12.jpg 		IL_31555.8 12 15
graphic file with name nihms783163t13.jpg HL_72498.17 65 78
graphic file with name nihms783163t14.jpg IL_85638.1 25 43