Table 1. Proportion of clustered SNPs found in different resequencing studies.

Genomic regions	Present study	Karmin et al.28 (all SNPs)	Karmin et al.28 (filtered SNPs)	Trombetta et al.28
	LTRs	Whole MSY	Whole MSY	Unique sequences of MSY (1.5 Mb)
Clustered SNPs	25	350	256	28
Conventional SNPs	109	42035	33072	3362
Total	134	42385	33328	3390
% of clustered SNPs	18.65	0.82	0.77	0.82
P-values (Fisher’s Exact Test, Two Sided) Present study vs…		P < 1 × 10−16	P < 1 × 10−16	P < 1 × 10−16