Table 2. Differentially abundant taxa between MS and control samples at phylum, family and genus-level.
| P value | Q value | MS Mean | Control Mean | Log2 fold change | MS prevalence | Control prevalence | |
|---|---|---|---|---|---|---|---|
| Phylum* | |||||||
| 4.09E-06 | 3.27E-05 | 1.32E-03 | 3.46E-03 | −1.39 | 31 | 36 | |
| Proteobacteria | 3.60E-03 | 1.44E-02 | 5.63E-03 | 2.03E-02 | −1.85 | 29 | 36 |
| Family* | |||||||
| Actinobacteria; Coriobacteriaceae | 2.13E-06 | 2.49E-05 | 1.22E-03 | 3.34E-03 | −1.46 | 31 | 36 |
| Bacteroidetes; Flavobacteriaceae | 1.76E-03 | 7.70E-03 | 2.26E-03 | 1.41E-05 | 7.33 | 25 | 14 |
| Bacteroidetes; Porphyromonadaceae | 4.85E-04 | 3.40E-03 | 8.60E-03 | 3.95E-02 | −2.20 | 30 | 36 |
| Bacteroidetes; Sphingobacteriaceae | 6.69E-08 | 2.34E-06 | 1.03E-03 | 1.89E-06 | 9.09 | 21 | 1 |
| Firmicutes; Erysipelotrichaceae | 6.90E-04 | 3.63E-03 | 9.77E-03 | 3.10E-02 | −1.67 | 31 | 36 |
| Firmicutes; Lachnospiraceae | 2.67E-03 | 1.04E-02 | 2.58E-01 | 1.61E-01 | 0.68 | 31 | 36 |
| Firmicutes; Lactobacillaceae | 5.38E-03 | 1.71E-02 | 7.24E-04 | 5.30E-03 | −2.87 | 24 | 33 |
| Firmicutes; Veillonellaceae | 7.25E-04 | 3.63E-03 | 4.54E-03 | 1.44E-02 | −1.67 | 31 | 36 |
| Proteobacteria; Caulobacteraceae | 3.58E-04 | 3.13E-03 | 2.03E-04 | 1.38E-06 | 7.20 | 15 | 3 |
| Proteobacteria; Enterobacteriaceae | 9.75E-03 | 2.84E-02 | 3.44E-03 | 1.69E-02 | −2.29 | 27 | 35 |
| Proteobacteria; Pasteurellaceae | 4.35E-03 | 1.52E-02 | 1.07E-04 | 3.67E-04 | −1.78 | 6 | 18 |
| Proteobacteria; Pseudomonadaceae | 6.96E-07 | 1.22E-05 | 1.44E-03 | 1.51E-04 | 3.25 | 23 | 3 |
| Genus* | |||||||
| Actinobacteria; Adlercreutzia | 1.39E-07 | 4.16E-06 | 8.99E-05 | 5.16E-04 | −2.52 | 25 | 34 |
| Actinobacteria; Collinsella | 6.87E-03 | 3.17E-02 | 8.69E-04 | 1.87E-03 | −1.11 | 26 | 30 |
| Actinobacteria; unclassified | 1.80E-03 | 1.34E-02 | 4.57E-05 | 4.92E-04 | −3.43 | 19 | 24 |
| Bacteroidetes; Flavobacterium | 1.76E-03 | 1.34E-02 | 2.26E-03 | 1.41E-05 | 7.33 | 25 | 14 |
| Bacteroidetes; Parabacteroides | 7.25E-04 | 7.25E-03 | 8.51E-03 | 3.93E-02 | −2.21 | 30 | 36 |
| Bacteroidetes; Pedobacter | 6.69E-08 | 4.01E-06 | 1.03E-03 | 1.89E-06 | 9.09 | 21 | 1 |
| Firmicutes; Blautia | 4.38E-04 | 5.25E-03 | 1.04E-01 | 5.03E-02 | 1.04 | 31 | 36 |
| Firmicutes; Coprobacillus | 2.24E-03 | 1.34E-02 | 5.01E-03 | 1.38E-02 | −1.46 | 31 | 36 |
| Firmicutes; Dorea | 2.05E-03 | 1.34E-02 | 4.66E-02 | 2.26E-02 | 1.05 | 31 | 36 |
| Firmicutes; Lactobacillus | 5.81E-03 | 2.90E-02 | 7.23E-04 | 5.24E-03 | −2.86 | 24 | 33 |
| Proteobacteria; Haemophilus | 4.35E-03 | 2.37E-02 | 1.07E-04 | 3.67E-04 | −1.78 | 6 | 18 |
| Proteobacteria; Mycoplana | 3.58E-04 | 5.25E-03 | 2.03E-04 | 1.38E-06 | 7.20 | 15 | 3 |
| Proteobacteria; Pseudomonas | 6.96E-07 | 1.39E-05 | 1.44E-03 | 1.51E-04 | 3.25 | 23 | 3 |
*-An FDR of 0.05 is used to identify these taxa.