Table 5.
Comparison of O. europaea with other plant species
| Species | Number of proteins | Average transcript length (bp) | Average coding sequence length (bp) | Average exons per transcript | Average exon length (bp) | Proteins with homologs in O. europaea | O. europaea proteins with homologs in the other species |
|---|---|---|---|---|---|---|---|
| Olea europaea | 56,349 | 3,953 | 1,050 | 4.54 | 315 | 56,349 (100 %) | 56,349 (100 %) |
| Arabidopsis thaliana | 35,378 | 2,341 | 1,234 | 5.89 | 261 | 23,106 (65.3 %) | 32,796 (58.2 %) |
| Erythranthe guttata | 31,861 | 3,378 | 1,351 | 5.77 | 300 | 24,373 (76.5 %) | 42,458 (75.3 %) |
| Solanum lycopersicum | 36,148 | 5,626 | 1,389 | 6.48 | 288 | 27,778 (76.8 %) | 38,448 (68.2 %) |
| Ricinus communis | 27,998 | 4,323 | 1,390 | 6.53 | 287 | 21,990 (78.5 %) | 37,264 (66.1 %) |
Average of the transcript length, coding sequence, exons per transcript and exon length of O. europaea, Arabidopsis thaliana, Erythranthe guttata, Solanum lycopersicum and Ricinus communis proteomes, the number of proteins with at least one homolog in O. europaea and the number of proteins of O. europaea with at least one homolog in the other species. The longest protein isoform per gene was used for homology search