TABLE 1.
Isolates and sequences used in the present studya
| Organism | Culture no. | Source, origin, yr | GenBank accession no. |
||||
|---|---|---|---|---|---|---|---|
| LSU | ITS | TEF1 | RPB2 | Other | |||
| Biatriospora mackinnonii | CBS674.75T | Mycetoma, Venezuela, 1975 | KF015612 | KF015654 | KF407986 | KF015703 | |
| CBS110022 | Mycetoma, Mexico, 1999 | KF015609 | KF015653 | KF407985 | KF015704 | ||
| IP1034.71* | Mycetoma, Costa Rica, 1971 | LT160875 | LT160874 | ||||
| IP72.65* | Mycetoma, Venezuela, 1965 | LT160877 | LT160876 | ||||
| IP67.52* | Mycetoma, Venezuela, 1952 | LT160879 | LT160878 | ||||
| NCPF 2290* | Mycetoma, Venezuela, 1981 | LT160881 | LT160880 | ||||
| NCPF 2292* | Mycetoma, Venezuela, 1981 | LT160883 | LT160882 | ||||
| NCPF 2294* | Mycetoma, Venezuela, 1981 | LT160885 | LT160884 | ||||
| NCPF 2297* | Mycetoma, Venezuela, 1981 | LT160887 | LT160886 | ||||
| NCPF 2323* | Mycetoma, Venezuela, 1982 | LT160889 | LT160888 | ||||
| Falciformispora senegalensis | NCPF 7023 | Mycetoma, Senegal, 1960 | LT160891 | LT160890 | |||
| CBS196.79T | Mycetoma, Senegal, 1979 | KF015631 | KF015673 | KF015687 | KF015717 | ||
| CBS197.79 | Mycetoma, Senegal, 1979 | KF015626 | KF015677 | KF015690 | KF015712 | ||
| IP612.60 | Mycetoma, Senegal, 1960 | LT160892 | |||||
| IP610.60 | Mycetoma, Senegal, 1960 | DQ836776 | |||||
| IP611.60 | Mycetoma, Senegal, 1960 | DQ836777 | |||||
| Falciformispora tompkinsii | CBS200.79 | Man, Senegal | KF015625 | KF015670 | KF015685 | KF015719 | |
| CBS201.79 | Man, Senegal | KF015624 | KF015671 | KF015686 | KF015718 | ||
| IP1151.76 | Mycetoma, Senegal, 1976 | DQ836778 | |||||
| IP1156.77 | Mycetoma, 1977 | LT160873 | |||||
| Medicopsis romeroi | CBS132878 | Mycetoma, India | KF015622 | KF015658 | KF015682 | KF015709 | |
| CBS252.60T | Mycetoma, Venezuela, 1960 | EU754207 | KF366446 | KF015678 | KF015708 | ||
| NCPF 2325 | Mycetoma, Venezuela, 1951 | AJ842341 | AJ842342 | ||||
| NCPF 2615* | Mycetoma, Pakistan, 1986 | LT160894 | LT160893 | ||||
| NCPF 2687* | Mycetoma, India, 1986 | LT160896 | LT160895 | ||||
| NCPF 2688* | Mycetoma, India, 1981 | LT160898 | LT160897 | ||||
| NCPF 2723* | Mycetoma, Pakistan, 1989 | LT160900 | LT160899 | ||||
| NCPF 2755* | Mycetoma, Unknown, 1990 | LT160902 | LT160901 | ||||
| NCPF 2859* | Mycetoma, India, 1992 | LT160904 | LT160903 | ||||
| NCPF 7251* | Mycetoma, Pakistan, 1996 | LT160906 | LT160905 | ||||
| NCPF 7521* | Mycetoma, India, 2000 | LT160908 | LT160907 | ||||
| NCPF 7525 | Mycetoma, Saudi Arabia, 2000 | LT160913 | |||||
| NCPF 7653* | Mycetoma, Pakistan, 2004 | LT160910 | LT160909 | ||||
| NCPF 7668* | Mycetoma, India, 2005 | LT160912 | LT160911 | ||||
| Pseudochaetosphaeronema larense | CBS640.73T | Mycetoma, Venezuela, 1973 | KF015611 | KF015656 | KF015684 | KF015706 | |
| CBS639.94 | Man, Venezuela, 1994 | KF015610 | KF015655 | KF015683 | KF015705 | ||
| Rhytidhysteron rufulum | IP234.61* | Mycetoma, Senegal, 1961 | LT160915 | LT160914 | |||
| IP696* | Mycetoma, Unknown | LT160917 | LT160916 | ||||
| IP1134.76* | Mycetoma, South Africa, 1976 | LT160919 | LT160918 | ||||
| NCPF 7709* | Mycetoma, Zimbabwe, 2005 | LT160921 | LT160920 | ||||
| Roussoella percutanea | CBS128203 | Subcutaneous, Aruba | KF366448 | KF322117 | KF407988 | KF366453 | |
| Trematosphaeria grisea | CBS332.50 (AUT) | Mycetoma, Chile, 1950 | KF015614 | KF015662 | KF015698 | KF015720 | |
| CBS246.66 | Abscess, India, 1966 | KF015615 | KF015661 | KF015697 | KF366454 | ||
| Trematosphaeria pertusa | CBS122371 | Plant, France | FJ201992 | KF015669 | KF015702 | GU371801 | |
| CBS122368 | Plant, France | FJ201990 | KF015668 | KF015701 | FJ795476 | ||
| Emarellia grisea gen. nov., sp. nov. | NCPF 7066T* | Mycetoma, India, 1976 | LT160923 | LT160922 | LT160934 | LT160933 | LT160932 |
| NCPF 7384* | Mycetoma, Sri Lanka, 1998 | LT160925 | LT160924 | LT160937 | LT160936 | LT160935 | |
| NCPF 7666* | Mycetoma, India, 2004 | LT160927 | LT160926 | LT160940 | LT160939 | LT160938 | |
| NCPF 7761* | Mycetoma, Sri Lanka, 2009 | FN600643 | FN600644 | LT160943 | LT160942 | FN600645; LT160941 | |
| IP66.52* | Mycetoma, unknown, 1952 | LT160929 | LT160928 | ||||
| Emarellia paragrisea gen. nov., sp. nov. | NCPF 7611T* | Mycetoma, unknown, 2002 | LT160931 | LT160930 | LT160946 | LT160945 | LT160944 |
a
Isolates indicated in boldface are novel to the present study; those denoted by an asterisk represent hitherto-unidentified organisms with colonial morphologies consistent with “Madurella grisea.” Accession numbers for the sequences of CBS isolates and NCPF 7761 were taken from references 12 and 34, respectively.