Table 3.
The characters of 29 consensus loci associated with PE and photosynthetic related traits across environments and treatments.
| Namea | Traits-years-treatmentsb | Chr.c | Marker intervald | Positione | LODf | PVE(%)g |
|---|---|---|---|---|---|---|
| q1 | CiLP-E1, CiNP-E2 | 1 | Marker399740–Marker405817 | 984367–984667 | 2.86 | 12.28 |
| q2-1 | CoLP-E1, PCLP-E2, PupLP-E2, PCLP-E1, PupLP-E1, PCLP-E3 | 2 | Marker2426304–Marker2355122 | 13942698–15102489 | 3.76 | 14.04 |
| q2-2 | RSNP-E2, TDWNP-E2, CCNP-E1, CCLP-E5 | 2 | Marker2359119–Marker2407344 | 41077137–45184430 | 4.02 | 9.16 |
| q3-1 | SDWLP-E1, PCNP-E1, PupNP-E1, CCNP-E1, TDWLP-E1 | 3 | Marker873205–Marker923093 | 2384930–7764196 | 3.19 | 8.39 |
| q3-2 | TDWLP-E2, CCNP-E2, CCLP-E1, CCLP-E2 | 3 | Marker968996–Marker945189 | 15406533–18840627 | 3.70 | 8.68 |
| q3-3 | CCNP-E1 | 3 | Marker953521–Marker863963 | 38757448–38757723 | 3.09 | 5.56 |
| q4-1 | PCNP-E2, PupNP-E2 | 4 | Marker70489–Marker94279 | 2244572–2244846 | 3.52 | 11.16 |
| q4-2 | PCNP-E4, PupNP-E2 | 4 | Marker67935–Marker129026 | 32704336–38198190 | 3.16 | 8.62 |
| q4-3 | RDWLP-E1, SDWNP-E2, SDWLP-E1, SDWNP-E1, RDWNP-E1, RDWNP-E2, TDWNP-E1, TDWNP-E2, SDWLP-E2, TDWLP-E2, CCNP-E1 | 4 | Marker101824–Marker58600 | 46024793–50216432 | 4.44 | 10.86 |
| q5 | CCLP-E3, SDWLP-E2 | 5 | Marker1911126–Marker1840642 | 5023300–5023579 | 4.30 | 9.16 |
| q6 | PCNP-E1, PupNP-E1, PupNP-E2 | 6 | Marker2071221–Marker2174814 | 15623936–15624197 | 4.02 | 11.22 |
| q8-1 | CCLP-E1, CCLP-E2, PCLP-E3 | 8 | Marker2655981–Marker2726667 | 1796491–5706738 | 4.12 | 8.89 |
| q8-2 | BYLP-E5, PUELP-E4, PCLP-E5, PupLP-E5, PUELP-E5 | 8 | Marker2655900–Marker2651744 | 11520732–13520574 | 3.55 | 8.01 |
| q9 | PnNP-E1 | 9 | Marker1658126–Marker1641616 | 43233332–43233607 | 3.54 | 9.82 |
| q10 | CCLP–E4 | 10 | Marker713711–Marker700268 | 36602559–36602814 | 3.31 | 9.50 |
| q11-1 | PCNP-E1, PupNP-E1, PCNP-E3 | 11 | Marker799502–Marker844658 | 7615924–7616190 | 5.33 | 15.96 |
| q11-2 | PCNP-E5, BYNP-E3, BYNP-E4, BYNP-E5, PupNP-E5, PUENP-E5, BYLP-E3, BYLP-E5, PupLP-E5 | 11 | Marker789315–Marker822756 | 24450424–24450687 | 3.22 | 7.18 |
| q12-1 | CCNP-E1, PnNP-E1, CoNP-E2, PnLP-E1, PnLP-E2, CoLP-E2, CCNP-E2, CCLP-E1, CCLP-E2 | 12 | Marker249870–Marker262276 | 3008087–4610598 | 7.37 | 23.74 |
| q12-2 | PnNP-E2, CCLP-E3 | 12 | Marker200457–Marker203972 | 31303690–31303972 | 3.05 | 13.78 |
| q13 | CCNP-E2, SDWNP-E1, SDWNP-E2, RDWNP-E2, TDWNP-E1, TDWNP-E2 | 13 | Marker1729776–Marker1778051 | 35339389–40660749 | 4.22 | 10.41 |
| q14-1 | TDWLP-E1 | 14 | Marker489485–Marker557885 | 33522076–33522349 | 3.83 | 9.26 |
| q14-2 | PCLP-E1, PupLP-E1, PCNP-E2, PupNP-E2, PCNP-E4, PupNP-E4, PUENP-E4, PupNP-E1, PCNP-E1, CiNP-E2, PCNP-E3, CiLP-E1, PCLP-E4, PupLP-E4, PUELP-E4, PupLP-E5, PnLP-E2, PCLP-E5, PUELP-E5, PCNP-E5, BYNP-E3, BYNP-E4, BYNP-E5, PupNP-E5, PUENP-E5, BYLP-E3, BYLP-E4, BYLP-E5 | 14 | Marker505100–Marker509340 | 45573911–47652816 | 4.59 | 14.66 |
| q15-1 | CoNP-E2, RSLP-E2 | 15 | Marker1309756–Marker1323793 | 2943851–7164361 | 3.54 | 10.18 |
| q15-2 | SDWLP-E1, SDWNP-E2, RDWNP-E2, TDWLP-E1, TDWNP-E1, TDWNP-E2, CoLP-E1, SDWNP-E1, RDWNP-E1, TrNP-E1, TrNP-E2, CiNP-E1, SDWLP-E2, TDWLP-2, PUELP-E2, PCLP-E3, PupLP-E3, PUELP-E3 | 15 | Marker1333127–Marker1381067 | 9586975–11346054 | 6.04 | 20.00 |
| q16 | PupNP-E3, PupNP-E4, PupLP-E4, PUELP-E4 | 16 | Marker1146835–Marker1164294 | 31778047–31778323 | 3.01 | 12.21 |
| q18-1 | CCLP-E5, CCLP-E3, CCLP-E3, CCLP-E4, CCLP-E5 | 18 | Marker2217116–Marker2237156 | 2037678–2889549 | 8.36 | 22.00 |
| q18-2 | RDWLP-E1 | 18 | Marker2270259–Marker2325242 | 53977091–53977334 | 4.16 | 12.73 |
| q19-1 | PCLP-E2, PupLP-E2 | 19 | Marker1039368–Marker1043830 | 36624688–36624978 | 3.43 | 11.47 |
| q19-2 | PUELP-E1, PUELP-E2, BYNP-E3, BYNP-E4, PCLP-E5, BYLP-E3, BYLP-E4, PupLP-E5, CCNP-E3, CCNP-E4, CCNP-E5, PCNP-E5, BYNP-E5, PupNP-E5, BYLP-E5, PUELP-E5, PCLP-E1, PCLP-E2, PupLP-E1, PupLP-E2, PCLP-E3, PCLP-E4, PUELP-E3, PUELP-E4, CiLP-E2, PUENP-E5, TrLP-E1, TrLP-E2 | 19 | Marker1094659–Marker1066605 | 44865752–49307740 | 6.51 | 20.03 |
The name of the QTL is defined by the chromosome number.
The traits-years-treatments of QTL is a composite of the influenced trait: RDW, root dry weight; SDW, shoot dry weight; TDW, total dry weight; R/S, root to shoot ratio; PC, P concentration; Pup, phosphorus uptake; PUE, phosphorus use efficiency; BY, biomass yield; PN, net photosynthetic rate; Tr, transpiration rate; and Ci, intercellular carbon dioxide concentration; Co, stomatal conductance; and CC, chlorophyll content; followed by the environments, treatments and growth stages. NP denotes a QTL underlying the influenced trait at normal P condition, and LP denotes a QTL at low P condition.
Chr indicates chromosome.
Interval indicates confidence interval between two SLAF markers.
Position indicates the interval of physical distance in soybean genome.
LOD indicates the average logarithm of odds score.
PVE2 indicates the average phenotypic variance explained by related QTL. Major QTLs are shown in bold.