Table 3.
Digital expression analysis.
| Genes | NCBI UniGene Id | EST and cDNA source from various wheat tissues | No of ESTs available in NCBI | No of mRNA seq available in NCBI | ||||
|---|---|---|---|---|---|---|---|---|
| Leaf | Root | Stem | Inflorescence | Developing seed | ||||
| TaClpB1 | Ta.54573 | ✓ | ✓ | ✓ | ✓ | 400 | 41 | |
| TaClpB2 | Ta.256 | ✓ | ✓ | ✓ | ✓ | 24 | 8 | |
| TaClpB3 | Ta.261 | ✓ | ✓ | ✓ | ✓ | 15 | 14 | |
| TaClpB4 | Ta.51477 | ✓ | 4 | 3 | ||||
| TaClpB5 | Ta.48427 | ✓ | ✓ | ✓ | ✓ | 41 | 19 | |
| TaClpC1 | Ta.49781 | ✓ | ✓ | ✓ | ✓ | ✓ | 293 | 3 |
| TaClpC2 | Ta.68721 | ✓ | 9 | |||||
| TaClpD1 | Ta.54390 | ✓ | ✓ | ✓ | ✓ | ✓ | 220 | 28 |
| TaClpD2 | Ta.48556 | ✓ | ✓ | ✓ | ✓ | ✓ | 23 | 27 |
NCBIUniGene ID was used to retrieve the respective Clp gene ESTs sequence information along with their respective cDNA library information from NCBI UniGene database (✓, Expressed; blank, not expressed).