Table 4.
Species | GenBank ID | Strain name | Insertion | MLST |
---|---|---|---|---|
site | ||||
S. argenteus | CCEM01000001 | Sa_LBSA043 | M | – |
S. aureus | AIDT01000009 | DR10 | H | 398 |
S. aureus | AUPV01000018 | S100 | H | 398 |
S. aureus | CAVU010000033 | S1805 | E | 80 |
S. aureus | CAWA010000053 | S2396 | E | 1 |
S. aureus | CFPN01000018 | USFL079 | L | 8 |
S. aureus | CGGX01000004 | USFL145 | A | 8 |
S. aureus | CIAK01000002 | USFL234 | J | 8 |
S. aureus | CIGG01000001 | USFL129 | C | 8 |
S. aureus | CP003045 | 71193 | H | 398 |
S. aureus | CSDA01000011 | USFL101 | L | 8 |
S. aureus | CSDP01000002 | USFL046 | J | 8 |
S. aureus | CSEJ01000001 | USFL123 | C | 8 |
S. aureus | CSEV01000003 | USFL189 | A2 | 828 |
S. aureus | CSFL01000012 | USFL078 | L | 8 |
S. aureus | CSHX01000003 | USFL190 | A2 | 828 |
S. aureus | CSJZ01000023 | USFL050 | nd | 8 slv* |
S. aureus | CTWU01000023 | M705 | K | 239 |
S. aureus | CTWW01000088 | H211 | K | 239 |
S. aureus | CTXO01000001 | M1229 | K | 239 |
S. aureus | CTXZ01000061 | H216 | K | 239 |
S. aureus | CTYD01000081 | H202 | K | 239 |
S. aureus | CVOP01000018 | SH3 | M | 630 |
S. aureus | CVOU01000018 | SH1 | M | 630 |
S. aureus | CVRW01000028 | M170 | K | 239 |
S. aureus | JBFG01000011 | KINW6058 | I | 5 |
S. aureus | JBGB01000006 | FVRH6130 | nd | 8 |
S. aureus | JBGS01000014 | GGMC6026 | I | 5 |
S. aureus | JBLE01000006 | SCOA6048 | H | 8 |
S. aureus | JBMX01000012 | SCOA6012 | H | 8 |
S. aureus | JDLS01000019 | T78544 | I | 5 |
S. aureus | JDOK01000060 | F35307 | nd | 5 |
S. aureus | JDOU01000017 | H27862 | I | 5 |
S. aureus | JDOV01000017 | H27872 | I | 5 |
S. aureus | JDPI01000020 | H67656 | I | 5 |
S. aureus | JECS01000014 | T34011 | I | 5 |
S. aureus | JEDV01000017 | H64967 | I | 5 |
S. aureus | JETJ01000039 | T22051 | nd | 5 |
S. aureus | JGNE01000030 | W41757 | nd | 5 |
S. aureus | JHTT01000046 | CO-86 | L | 8 |
S. aureus | JIXI01000011 | PA57 | H | 398 |
S. aureus | JIYX01000004 | C5086 | H | 398 slv |
S. aureus | JJDE01000001 | 122 | H | 398 |
S. aureus | JURB01000090 | 84_SAUR | F | 5 |
S. aureus | JUTG01000033 | 78_SAUR | F | 5 |
S. aureus | JVUC01000150 | 1315_SAUR | nd | 15 |
S. aureus | JZAL01000002 | LHSKBClinical | C | 8 |
S. aureus | LAMP01000014 | 99-06 | L | 8 |
S. aureus | LAMS01000038 | 99-48 | L | 8 |
S. epidermidis | ACHE01000003 | BCM-HMP0060 | – | 59 |
S. epidermidis | AGUC01000094 | 14.1.R1.SE | – | – |
S. epidermidis | AHLC01000060 | VCU120 | – | 22 |
S. epidermidis | AHLF01000017 | VCU125 | – | 384 |
S. epidermidis | AKGM01000041 | NIHLM067 | – | 333 |
S. epidermidis | AKGN01000056 | NIHLM061 | – | 332 |
S. epidermidis | AKGW01000049 | NIHLM020 | – | 7 |
S. epidermidis | APHT01000038 | 528m | – | 2 |
S. epidermidis | APHU01000037 | 41tr | – | 2 |
S. epidermidis | ARWU01000031 | UC7032 | – | 595 |
S. epidermidis | JUMV01000141 | 938_SEPI | – | 59 |
S. epidermidis | JUNI01000550 | 926_SEPI | – | 59 |
S. epidermidis | JUVK01000069 | 73_SEPI | – | 16 |
S. epidermidis | JUYJ01000034 | 655_SEPI | – | 59 |
S. epidermidis | JUYK01000190 | 654_SEPI | – | 59 |
S. epidermidis | JVQK01000079 | 196_SEPI | – | 59 |
S. epidermidis | JVSC01000077 | 154_SEPI | – | 59 |
S. epidermidis | JVSC01000077 | 154_SEPI | – | 59 |
S. epidermidis | JVSZ01000046 | 134_SEPI | – | 59 |
S. epidermidis | JVTV01000122 | 1321_SEPI | – | 59 |
S. epidermidis | JWBR01000039 | 114_SEPI | – | – |
S. epidermidis | JWCR01000091 | 1115_SEPI | – | 88 |
S. epidermidis | JWEH01000024 | 1063_SEPI | – | 2 |
S. epidermidis | JWFU01000070 | 1024_SEPI | – | 2 |
S. epidermidis | JWFV01000104 | 1023_SEPI | – | 2 |
S. epidermidis | JZUK01000044 | NGS-ED-1107 | – | 2 |
S. epidermidis | JZUL01000024 | NGS-ED-1109 | – | 439 |
S. haemolyticus | CP011116 | Sh29/312/L2 | – | – |
S. haemolyticus | CUEZ01000014 | CN1197 | – | – |
S. saprophyticus | JXBG01000015 | SU8 | – | – |
S. warneri | CANQ01000015 | A487 | – | – |
S. warneri | JPOW01000002 | NGS-ED-1001 | – | – |
slv = single locus variant; targets A–G from our genome sequences; targets H–Z from Genbank, nd not determined.