TABLE 3.

A. circinalis 306A putative specific sequences with significant protein matches in The National Center for Biotechnology Information protein database

Clone	GenBanka accession no.	Best BLASTX hit	Organism	% Identity	% Similarity	Microarray hybridization ratio (avg ± SE)b
208	AY326680	Serine/threonine kinase	O. javanicus	31	56	2.28 ± 0.22
158	AY326683	Hypothetical protein	Nostoc punctiforme	59	76	1.86 ± 0.12
205	AY326677	Splicing factor Prp8	Guillardia theta	31	53	1.59 ± 0.01
163	AY326685	Hypothetical protein	Rhodobacter sphaeroides	43	56	1.41 ± 0.26
210	AY326681	Hypothetical protein	Nostoc sp. strain PCC7120	37	68	1.11 ± 0.05
166	AY326687	Locus CG32796-PB	Drosophila melanogaster	40	65	1.04 ± 0.06
162	AY326684	Hypothetical protein	N. punctiforme	47	54	1.00 ± 0.02
164	AY326686	Two-component sensor histidine kinase	Nostoc sp. strain PCC71120	75	91	0.92 ± 0.09
143	AY326673	DNA polymerase III alpha subunit	Bacteriodes thetaiotaomicron VPI-5482	80	85	0.66 ± 0.02
137	AY326674	Hypothetical protein	Cytophaga hutchinsonii	33	61	0.65 ± 0.02
140	AY326672	Conserved hypothetical protein	B. thetaiotaomicron VPI-5482	41	66	0.55 ± 0.01
207	AY326679	Conserved hypothetical protein	Yersinia pestis KIM	47	65	0.51 ± 0.03
202	AY326675	Hypothetical protein	N. punctiforme	55	77	0.48 ± 0.18
206	AY326678	Hypothetical protein	C. hutchinsonii	34	57	0.37 ± 0.05
204	AY326676	Hypothetical protein	C. hutchinsonii	44	67	0.16 ± 0.03
213	AY326682	cylM protein	Enterococcus faecalis V583	42	57	NDc

^aNucleotide sequence database (http://www.ncbi.nlm.nih.gov/Genbank).

^bValues are the result of two independent hybridizations and are expressed as averages ± standard errors of Cy5/Cy3 normalized ratios.

^cND, not detected.