Table 1.

Read statistics for the three NILs after F. graminearum inoculation

Summary			All Reads	Mapped Reads	Unmaped Reads	Unique Mapped Reads	Mapping Rates	Unique Mapping Rates
NIL1	0 hpi	repl_1	24,725,166	19,999,237	4,725,929	16,288,802	0.81	0.66
		repl_2	36,908,812	29,404,019	7,504,793	25,159,617	0.80	0.68
	6 hpi	repl_1	32,929,308	23,508,743	9,420,565	21,025,580	0.71	0.64
		repl_2	35,884,870	26,236,676	9,648,194	23,196,198	0.73	0.65
	18 hpi	repl_1	37,364,076	28,211,864	9,152,212	25,150,279	0.76	0.67
		repl_2	22,144,122	17,404,687	4,739,435	14,956,659	0.79	0.68
NIL2	0 hpi	repl_1	24,034,692	17,845,686	6,189,006	15,475,706	0.74	0.64
		repl_2	24,132,588	17,996,916	6,135,672	16,093,485	0.75	0.67
	6 hpi	repl_1	27,813,894	20,671,379	7,142,515	17,972,166	0.74	0.65
		repl_2	26,652,486	19,881,940	6,770,546	16,687,925	0.75	0.63
	18 hpi	repl_1	30,841,200	22,956,649	7,884,551	19,430,995	0.74	0.63
		repl_2	25,759,186	20,212,586	5,546,600	14,044,578	0.78	0.55
NIL3	0 hpi	repl_1	34,672,018	26,572,699	8,099,319	23,566,987	0.77	0.68
		repl_2	32,627,954	24,959,620	7,668,334	21,711,717	0.76	0.67
	6 hpi	repl_1	30,388,570	22,870,029	7,518,541	20,120,065	0.75	0.66
		repl_2	36,744,900	26,288,000	10,456,900	22,800,689	0.72	0.62
	18 hpi	repl_1	25,082,644	18,406,593	6,676,051	16,339,773	0.73	0.65
		repl_2	27,478,166	20,242,941	7,235,225	17,481,937	0.74	0.64