Table 1.
Sequences for Oligonucleotide Probes and for the Standards for Quantification of the Species/Phylotypes Evaluated.
| Species/Phylotypes | Sequence (5′–3′) | Control (5′–3′) |
|---|---|---|
| Anaeroglobus geminatus HOT 121 | CGCUAAGAGGACCGUAUU | AAUACGGUCCUCUUAGCG |
| Bacteroidales sp. HOT 274 | ACGUGUCUCACUUUACUCC | GGAGUAAAGUGAGACACGU |
| Desulfobulbus sp. HOT 041 | UGUUAUUCGCUGCCUUGCA | UGCAAGGCAGCGAAUAACA |
| Enterococcus faecalis HOT 604 | UCCUCUUUCCAAUUGAGUGC | GCACUCAAUUGGAAAGAGGA |
| Eubacterium saphenum HOT 759 | CACUCAAGUCUGCCAGUU | AACUGGCAGACUUGAGUG |
| Filifactor alocis HOT 539 | GGCUCAUCUUUGUCCACU | AGUGGACAAAGAUGAGCC |
| Fretibacterium fastidiosum HOT 363 | GUGUUACCACUUCACGA | GUCGUGAAGUGGUAACAC |
| Fretibacterium sp. HOT 360 | GCAGCGUCGUCAAUGUUU | AAACAUUGACGACGCUGC |
| Fretibacterium sp. HOT 362 | ACACGAGUGCCUCCUGU | ACAGGAGGCACUCGUGU |
| Mogibacterium timidum HOT 042 | GCGUCAUUUCCAAGCUUC | GAAGCUUGGAAAUGACGC |
| Peptostreptococcus stomatis HOT 112 | GCGUCAUUUCCAAGCUUC | UCUGAGCAAAACCAAGCG |
| Porphyromonas endodontalis HOT 273 | UCUUUCCGUCUUUCCCCA | AUGGGGAAAGACGGAAAGA |
| Porphyromonas gingivalis HOT 619 | CACCAUCAGUCAUCUAC | GUAGAUGACUGAUGGUG |
| Prevotella denticola HOT 291 | ACACGAGUGCCUCCUGU | ACAGGAGGCACUCGUGU |
| Selenomonas sputigena HOT 151 | CCCUUAUGAAGCACUGAG | CUCAGUGCUUCAUAAGGG |
| Tannerella forsythia HOT 613 | UUGCGGGCAGGUUACAUA | UAUGUAACCUGCCCGCAA |
| TM7 sp. HOT 356 | CGAACAACAAGCUAUCGG | CCGAUAGCUUGUUGUUCG |
| Treponema lecithinolyticum HOT 653 | ACACCAAGCUUGCUCAUC | GAUGAGCAAGCUUGGUGU |
| Treponema medium HOT 667 | CCCUUAUGAAGCACUGAG | CUCAGUGCUUCAUAAGGG |
| Treponema vincentii HOT 029 | CCCUUAUGAAGCACUGAG | CUCAGUGCUUCAUAAGGG |
HOT, human oral taxon.
Oral taxon designations for uncultivated/unrecognized taxa are provided in accordance with the Human Oral Microbiome Database (www.homd.org), when available; GenBank accession numbers can also be found in the website.