Table 2. LncRNAs significantly increased/decreased in the progressive forms of plasma cell dyscrasias.

lncRNAs SENSE or ANTISENSE (S or AS) TO ANNOTATED TRANSCRIPTS
TREND	lncRNAs q<0.05a	Chr	ALIAS; OVERLAPPING TRANSCRIPTSb	Corr. lncRNA-overlapping transcriptc	PsGd	Putative Parental Gene	Corr. lncRNA- parental genec
↑	RLIM-6	Xq13	AS to SLC16A2	R=0.37 p=3.7e-10
↑	ANGPTL1-3	1q25	AS to RALGPS2	R=0.3 p=3.8e-08
↑	SENP5-4	3q29	NCBP2-AS2; S to NCBP2	R= − 0.054
↓	LRRC47-1	1p36	TP73-AS1; AS to TP73	R=0.03
↑	WHAMM-2	15q25	SNHG21; AS to FSD2	R= − 0.03
↑	SERPINC1-1	1q25	GAS5; AS to ZBTB37	R= 0.29 p=1.1e-06
↓	SNX29P2-3	16p11	AS to NPIPL1	NA	P	NA
↓	HSFY2-10	Yq11	CD24P4; S to CD24	NA	PP	CD24 (Yq11)	NA
↑	CPSF2-2	14q32	AS to TRIP11	R= 0.063	PP	PTMA (2q37)	R= − 0.32 p=7.8e-08
LINC
TREND	lncRNAs q<0.05 a	Chr	ALIAS		PsGd	Putative Parental Gene	Corr. lncRNA- parental genec
↓	IRF2-3	4q35
↓	VKORC1L1-3	7q11	RP13-254B10.1		PP	NA
↓	STOM-7	9q33	GGTA1P		UP	NA
↑	RALGAPB-1	20q11	SNHG11
↑	MC2R-2	18p11	RP11-681N23.1		PP	RPL36A (Xq22)	NA
↑	SAFB2-3	19p13	SNRPEP4		PP	SNRPE (1q32)	R=0.5 p=0.030
↑	KIF20B-7	10q23	SNRPD2P1		PP	SNRPD2 (19q13)	R=0.79 p<2.2e-16
↑	DNAJC16-1	1p36	CHCHD2P6 (447bp, and 462bp)		PP	CHCHD2 (7p11)	NA
↑	WDR11-7	10q26	RN7SKP167 RNA		M	RN7SK (6p12)	NA
↑	PNRC1-1	6q15	RN7SL336P		M	RN7SL (14q21)	NA
↑	DLX5-4	7q21	RN7SL252P		M	RN7SL (14q21)	NA
↑	ZC3H12B-10	Xq11	RN7SL799P		M	RN7SL (14q21)	NA

Arrows indicate lncRNA expression (upregulation ↑/downregulation ↓), from N to PCL samples. Chromosomal localization (Chr), alias name, and overlapping transcripts are indicated.

^alncRNAs also found in Table 1 are in bold;

^bSense (S) to, or Antisense (AS) to overlapping transcripts;

^cPearson correlation coefficient; NA=not available (not detected by the array);

^dPsG=Pseudogene; Ensembl type: PP= Processed Pseudogene; UP= Unitary Pseudogene; UnP= Unprocessed Pseudogene; M= miscellaneous RNA.