Table 2. LncRNAs significantly increased/decreased in the progressive forms of plasma cell dyscrasias.
lncRNAs SENSE or ANTISENSE (S or AS) TO ANNOTATED TRANSCRIPTS | |||||||
---|---|---|---|---|---|---|---|
TREND | lncRNAs q<0.05a | Chr | ALIAS; OVERLAPPING TRANSCRIPTSb | Corr. lncRNA-overlapping transcriptc | PsGd | Putative Parental Gene | Corr. lncRNA- parental genec |
↑ | RLIM-6 | Xq13 | AS to SLC16A2 | R=0.37 p=3.7e-10 |
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↑ | ANGPTL1-3 | 1q25 | AS to RALGPS2 | R=0.3 p=3.8e-08 |
|||
↑ | SENP5-4 | 3q29 | NCBP2-AS2; S to NCBP2 | R= − 0.054 | |||
↓ | LRRC47-1 | 1p36 | TP73-AS1; AS to TP73 | R=0.03 | |||
↑ | WHAMM-2 | 15q25 | SNHG21; AS to FSD2 | R= − 0.03 | |||
↑ | SERPINC1-1 | 1q25 | GAS5; AS to ZBTB37 | R= 0.29 p=1.1e-06 |
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↓ | SNX29P2-3 | 16p11 | AS to NPIPL1 | NA | P | NA | |
↓ | HSFY2-10 | Yq11 | CD24P4; S to CD24 | NA | PP | CD24 (Yq11) | NA |
↑ | CPSF2-2 | 14q32 | AS to TRIP11 | R= 0.063 | PP | PTMA (2q37) | R= − 0.32 p=7.8e-08 |
LINC | |||||||
TREND | lncRNAs q<0.05 a | Chr | ALIAS | PsGd | Putative Parental Gene | Corr. lncRNA- parental genec | |
↓ | IRF2-3 | 4q35 | |||||
↓ | VKORC1L1-3 | 7q11 | RP13-254B10.1 | PP | NA | ||
↓ | STOM-7 | 9q33 | GGTA1P | UP | NA | ||
↑ | RALGAPB-1 | 20q11 | SNHG11 | ||||
↑ | MC2R-2 | 18p11 | RP11-681N23.1 | PP | RPL36A (Xq22) | NA | |
↑ | SAFB2-3 | 19p13 | SNRPEP4 | PP | SNRPE (1q32) | R=0.5 p=0.030 | |
↑ | KIF20B-7 | 10q23 | SNRPD2P1 | PP | SNRPD2 (19q13) | R=0.79 p<2.2e-16 | |
↑ | DNAJC16-1 | 1p36 | CHCHD2P6 (447bp, and 462bp) | PP | CHCHD2 (7p11) | NA | |
↑ | WDR11-7 | 10q26 | RN7SKP167 RNA | M | RN7SK (6p12) | NA | |
↑ | PNRC1-1 | 6q15 | RN7SL336P | M | RN7SL (14q21) | NA | |
↑ | DLX5-4 | 7q21 | RN7SL252P | M | RN7SL (14q21) | NA | |
↑ | ZC3H12B-10 | Xq11 | RN7SL799P | M | RN7SL (14q21) | NA |
Arrows indicate lncRNA expression (upregulation ↑/downregulation ↓), from N to PCL samples. Chromosomal localization (Chr), alias name, and overlapping transcripts are indicated.
lncRNAs also found in Table 1 are in bold;
Sense (S) to, or Antisense (AS) to overlapping transcripts;
Pearson correlation coefficient; NA=not available (not detected by the array);
PsG=Pseudogene; Ensembl type: PP= Processed Pseudogene; UP= Unitary Pseudogene; UnP= Unprocessed Pseudogene; M= miscellaneous RNA.