Table 2. Annotation and classification of putative SNPs.

SNP annotation	Number of SNPs
Total SNPs	106,457
SNPs in annotated genes	12,643
UTR	23,047
Intron	29,147
Intergenic	14,008
Non-synonymous SNPs	6,095
Synonymous SNP	16,237
CDS	22,332
Splice region	222
Termination codons	26
Upstream	10,131
Downstream	29,092