Table 5.
Scenario | Mean pedigree relatedness within core | Mean of absolute values of columns of for core | Mean number of genotyped offspring | Part of genotyped animals in core for each birth year | ||||
---|---|---|---|---|---|---|---|---|
2014 | 2013 | 2012 | 2011 | <2011 | ||||
NormalGa | 0.21 | 0.0005 | 1.0 | 1 | 1 | 1 | 1 | 1 |
Random10b | 0.21 | 0.0006 | 1.0 | 0.10 | 0.10 | 0.11 | 0.10 | 0.10 |
Unrelated10c | 0.15 | 0.0006 | 0.7 | 0 | 0 | 0.01 | 0.05 | 0.44 |
Offspring10d | 0.19 | 0.0022 | 9.8 | 0 | 0.08 | 0.17 | 0.13 | 0.23 |
OffspringRandom10e | 0.21 | 0.0021 | 9.4 | 0.09 | 0.06 | 0.13 | 0.10 | 0.13 |
Random30b | 0.21 | 0.0005 | 1.0 | 0.31 | 0.29 | 0.31 | 0.29 | 0.30 |
Random50b | 0.21 | 0.0006 | 1.0 | 0.50 | 0.48 | 0.50 | 0.50 | 0.51 |
Old10f | 0.15 | 0.0008 | 1.6 | 0 | 0 | 0 | 0 | 0.48 |
Young10g | 0.25 | 0.0003 | 0 | 0.29 | 0 | 0 | 0 | 0 |
aNormalG is the usual single-step procedure without sparse approximations
bRandom10, Random30, Random50 are the sparse single-step, where a random subset of animals (10, 30, 50 %) were treated as core
cUnrelated10 is 10 % animals chosen as core by minimizing the degree of relatedness between core animals
dOffspring10 is 10 % animals chosen based on the number of genotyped offspring
eOffspringRandom10 is, for old animals (excluding last year of birth) 10 % animals chosen based on the number of genotyped offspring, whereas for young animals (last year of birth) 10 % of the animals were chosen at random
fOld10 is the sparse single-step, where the 10 % oldest animals were treated as core
gYoung10 is the sparse single-step, where the 10 % youngest animals were treated as core