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. 2016 Jun 29;48:48. doi: 10.1186/s12711-016-0227-8

Table 6.

Summary statistics for animals in the core groups for the Landrace breed for alternate scenarios for choice of the core group

Scenario Mean pedigree relatedness within core Mean of absolute values of columns of A22-1 for core Mean number of genotyped offspring Part of genotyped animals in core for each birth year
2014 2013 2012 2011 <2011
NormalGa 0.25 0.0004 1.3 1 1 1 1 1
Random10b 0.25 0.0004 1.5 0.10 0.10 0.10 0.10 0.09
Unrelated10c 0.17 0.0004 1.2 0.01 0.03 0.08 0.17 0.73
Offspring10d 0.23 0.0016 12.5 0.01 0.15 0.16 0.11 0.27
OffspringRandom10e 0.25 0.0015 11.4 0.09 0.09 0.11 0.08 0.15
Random30b 0.25 0.0004 1.4 0.29 0.30 0.31 0.31 0.29
Random50b 0.25 0.0004 1.4 0.50 0.50 0.52 0.50 0.48
Old10f 0.18 0.0006 2.5 0 0 0 0.17 1
Young10g 0.27 0.0002 0 0.21 0 0 0 0

aNormalG is the usual single-step procedure without sparse approximations

bRandom10, Random30, Random50 are the sparse single-step, where a random subset of animals (10, 30, 50 %) were treated as core

cUnrelated10 is 10 % animals chosen as core by minimizing the degree of relatedness between core animals

dOffspring10 is 10 % animals chosen based on the number of genotyped offspring

eOffspringRandom10 is, for old animals (excluding last year of birth) 10 % animals chosen based on the number of genotyped offspring, whereas for young animals (last year of birth) 10 % of the animals were chosen at random

fOld10 is the sparse single-step, where the 10 % oldest animals were treated as core

gYoung10 is the sparse single-step, where the 10 % youngest animals were treated as core