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. Author manuscript; available in PMC: 2016 Dec 6.
Published in final edited form as: Nat Genet. 2016 Jun 6;48(7):817–820. doi: 10.1038/ng.3583

Figure 1. Performance on UK-BiLEVE chromosome 20 dataset.

Figure 1

Computation time (left) and switch error rate (right) of different phasing routines. Estimated haplotypes are compared to those derived from the IBD1 segments of the 384 likely sibling pairs. HAPI-UR 1X is the average switch error rate/time across three runs of HAPI-UR. HAPI-UR 3X performs majority voting of haplotypes across three runs (computation is the sum of three runs of HAPI-UR). SHAPEIT3 was run with cluster size M = 4,000, which substantially improves computational complexity, and hence running time compared to SHAPEIT2. Both SHAPEIT runs use K=100 conditioning states.