Table 1. PCR primers for a two-step PCR process used to screen F3 fish fin-clip gDNA as either gnrh3+/+, gnrh3+/-, or gnrh3-/- and to submit for sequencing.
Primer | PCR Step | Type | Sequence (5' → 3') | Tm (°C) | GC % | Amplicon size (bp)* |
---|---|---|---|---|---|---|
Step1mutantFor | 1 | Mutant For | TTAGTTTAGATTTCAGCAGTTTTAGCATCATA | 55.3 | 28.1 | 544 |
Step1WTFor | 1 | WT For | GAAGGTTGCTGGTCCAGTTGTTGCTG | 62.2 | 53.8 | 582 |
Step2For | 2 | For | TTGAGATGGAAGACAATCCTTT | 51.9 | 36.4 | 800 |
StepRev | 1 and 2 | Rev | TGCACATGTACTTGCTGAATTA | 52.6 | 36.4 |
*when paired with StepRev primer.