Table 1. Summary of assembly statistics for human sample NA12878.
The different rows correspond to the results from the initial de novo short-read-based assembly, the 10XG-scaffolded assembly, the BNG map assembly, and the final hybrid assembly, respectively. Statistics for the Illumina assembly were calculated after filtering for scaffolds that were at least 3 kb in length, since those served as input to the next step of the assembly.
Assembly | Total map length (Gb) | Number of Scaffolds | Scaffold N50 (Mb) | Longest Scaffold (Mb) |
---|---|---|---|---|
Illumina | 2.79 | 14,047 | 0.59 | 5.57 |
10XG | 2.81 | 5,697 | 7.03 | 37.9 |
BNG | 2.93 | 1,079 | 4.59 | 26.6 |
Hybrid | 2.86 | 170 | 33.5 | 99.96 |