. Author manuscript; available in PMC: 2016 Nov 9.

Published in final edited form as: Nat Methods. 2016 May 9;13(7):587–590. doi: 10.1038/nmeth.3865

Table 2.

Comparison with other NA12878 assemblies.

	This study	Ref 21	ALLPATHS-LG²²
Input data	Illumina paired-end and mate-pair reads; 10XG reads; BNG genome maps	PacBio reads; BNG genome maps	Illumina paired-end, mate-pair, and fosmid-based short reads
Scaffold N50 (Mb)	33.5	31.1	11.5
Number of scaffolds	170	202	23,634
Assembly length (Gb)	2.86	2.76	2.78
Validity at 100kb (%)	95.2	97.5	93.5
N content (%)	10.2	4.61	5.90
Phase block N50	4.7 Mb	145 kb	N/A
Phased SNVs	2,783,119	2,421,740	N/A