Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2016 Jun 30;7:985. doi: 10.3389/fmicb.2016.00985

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2016 Rusconi, Sanjar, Koenig, Mammel, Tarr and Eppinger.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

PMC Copyright notice

Phylogenetic tree for Taco Bell (A) and Cookie dough (B) outbreak strains. Maximum parsimony phylogeny computed from 37 TB and 14 CD SNPs identified in the respective outbreak associated strains. (A) By using a TB outbreak-specific reference (EC4401) we increased the phylogenetic resolution for these highly clonal strains. (B) Maximum parsimony phylogeny delineated from 14 SNPs discovered in the four CD outbreak associated strains. Strain EC1736 served as reference for the read based discovery. Majority of SNPs (#11) were specific to EC1734 and probably false positives from through assembly based discovery.