Table 4.

Comparison of common vs. PM/IH-specific genic SNPs.

	Isolate	Sequences analyzeda	Synonymous SNPs in isolates, among backbone ORFs		Nonsynonymous SNPs in isolates, among backbone ORFs
			Compared to reference EC4115	Compared to outbreak strain	Compared to reference EC4115	Compared to outbreak strain
PM	B26-1	A	0	0	0	0
	B26-2	A	0	Reference	0	Reference
PM	B28-1	A	0	Reference	0	Reference
	B28-2	A	0	0	0	0
PM	B29-1	A	0	0	0	0
	B29-2	A	0	Reference	0	Reference
PM	B36-1	A	0	0	0	0
	B36-2	A	0	Reference	0	Reference
PM	B40-1	A	0	Reference	0	Reference
	B40-2	A	0	0	0	0
PM	B7-1	A	0	0	0	0
	B7-2	A	0	Reference	0	Reference
IH	B83	A	0	0	0	0
	B84	A	0	Reference	0	Reference
IH	B85	A	0	Reference	0	Reference
	B86	A	0	0	0	0
IH	B89	A	0	0	0	0
	B90	A	0	Reference	0	Reference
IH	B93	A	0	Reference	0	Reference
	B94	A	0	0	0	0
IH	B15	A	0	0	0	0
	B17	A	0	Reference	0	Reference
IH	B108	A	0	0	0	0
	B109	A	0	Reference	0	Reference

^aThis study/short reads in NCBI = A, WGS = B, assembled genomes in NCBI = C.