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. Author manuscript; available in PMC: 2016 Jun 30.
Published in final edited form as: Curr Protoc Toxicol. 2016 Feb 1;67:20.11.1–20.11.25. doi: 10.1002/0471140856.tx2011s67

Table 3.

Real-time PCR primers and targets

Species Genome Forward Primer Seq Reverse Primer Seq Annealing
Temperature
(°C)
Reference

C. elegans mt 75 bp mito fragment of nd1 mito 60 Bratic et al. (2009)
5’-AGC GTC ATT TAT TGG
GAA GAA GAC-3’
5’- AAG CTT GTG CTA ATC
CCA TAA ATG T -3’

nuc 164 bp nuc fragment of cox4 60 Rooney et al. (2015)
5’-GCC GAC TGG AAG AAC
TTG TC-3’
5’-GCG GAG ATC ACC TTC
CAG TA-3’

D. rerio mt 195 bp nd1 mito fragment 60 This unit
5’-CGT TTA CCC CAG ATG
CAC CT-3’
5’-GTG CGA TTG GTA GGG
CGA TA-3’

nuc 90 bp nuc fragment of vtg2 60
5’-TGG ATA CCT GAC CGA
GAG CT-3’
5’-AGA CAA CTC TTA CGG
CTG GC-3’

H. sapiens mt 107 bp mito fragment of tRNA-Leu(UUR) gene 62 Venegas and Halberg (2012)
5’-CAC CCA AGA ACA GGG
TTT GT-3’
5’-TGG CCA TGG GTA TGT
TGT TA-3’

nuc 86 bp nuc fragment of β2-microglobulin gene 62
5’- TGC TGT CTC CAT GTT
TGA TGT ATC T -3’
5’- TCT CTG CTC CCC ACC
TCT AAG T -3’

R.
norvegicus
mt 181 bp mito fragment 60 This unit
5’- CAA ACC TTT CCT GCA
CCT CC -3’
5’- AGG CGT TCT GAT GAT
GGG AA -3’

nuc 144 bp nuc fragment from 3',5'-cyclic AMP
phosphodiesterase (PDE4-1, PDE4-2) gene
62
5’-GTT CCC GCC TTC TTC
CTC TG-3’
5’-GTT TGC TTG CCG ACT
CCT TG-3’

F.
heteroclitus
mt 131 bp mito fragment of 16S rRNA gene 60 This unit
5’-AAA ATT AAC GGC CCC
AAC CC-3’
5’-CCG AGT TCC TTC TTC
CCC TT-3’

nuc 234 bp nuc fragment of CFTR gene 60 Hunter et al. (2010)
Jung et al. (2009)
5’-GCC GCT GCC TTC ATT
GCT GT-3’
5’-ATG AGC TGG GTG TGC
GCT GA-3’