Table 3.
Real-time PCR primers and targets
| Species | Genome | Forward Primer Seq | Reverse Primer Seq | Annealing Temperature (°C) |
Reference |
|---|---|---|---|---|---|
| C. elegans | mt | 75 bp mito fragment of nd1 mito | 60 | Bratic et al. (2009) | |
| 5’-AGC GTC ATT TAT TGG GAA GAA GAC-3’ |
5’- AAG CTT GTG CTA ATC CCA TAA ATG T -3’ |
||||
| nuc | 164 bp nuc fragment of cox4 | 60 | Rooney et al. (2015) | ||
| 5’-GCC GAC TGG AAG AAC TTG TC-3’ |
5’-GCG GAG ATC ACC TTC CAG TA-3’ |
||||
| D. rerio | mt | 195 bp nd1 mito fragment | 60 | This unit | |
| 5’-CGT TTA CCC CAG ATG CAC CT-3’ |
5’-GTG CGA TTG GTA GGG CGA TA-3’ |
||||
| nuc | 90 bp nuc fragment of vtg2 | 60 | |||
| 5’-TGG ATA CCT GAC CGA GAG CT-3’ |
5’-AGA CAA CTC TTA CGG CTG GC-3’ |
||||
| H. sapiens | mt | 107 bp mito fragment of tRNA-Leu(UUR) gene | 62 | Venegas and Halberg (2012) | |
| 5’-CAC CCA AGA ACA GGG TTT GT-3’ |
5’-TGG CCA TGG GTA TGT TGT TA-3’ |
||||
| nuc | 86 bp nuc fragment of β2-microglobulin gene | 62 | |||
| 5’- TGC TGT CTC CAT GTT TGA TGT ATC T -3’ |
5’- TCT CTG CTC CCC ACC TCT AAG T -3’ |
||||
|
R. norvegicus |
mt | 181 bp mito fragment | 60 | This unit | |
| 5’- CAA ACC TTT CCT GCA CCT CC -3’ |
5’- AGG CGT TCT GAT GAT GGG AA -3’ |
||||
| nuc | 144 bp nuc fragment from 3',5'-cyclic AMP phosphodiesterase (PDE4-1, PDE4-2) gene |
62 | |||
| 5’-GTT CCC GCC TTC TTC CTC TG-3’ |
5’-GTT TGC TTG CCG ACT CCT TG-3’ |
||||
|
F. heteroclitus |
mt | 131 bp mito fragment of 16S rRNA gene | 60 | This unit | |
| 5’-AAA ATT AAC GGC CCC AAC CC-3’ |
5’-CCG AGT TCC TTC TTC CCC TT-3’ |
||||
| nuc | 234 bp nuc fragment of CFTR gene | 60 |
Hunter et al. (2010) Jung et al. (2009) |
||
| 5’-GCC GCT GCC TTC ATT GCT GT-3’ |
5’-ATG AGC TGG GTG TGC GCT GA-3’ |
||||