Table 1.
Distribution of identified GH domains and multi-activity GHs (i.e., MA-GHs) in sequenced bacterial genomes
| GH | PFAM | Sub. | #DOM. | #Prot. | CAZy | MA-GHs (2nd GH domain) | Figure | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5 | 6 | 8 | 9 | 10 | 11 | 12 | 18 | 19 | 44 | 48 | |||||||
| 5 | PF00150 | Cel. | 7908 | 7885 | 4907 | 23 | 3 | 2 | 2 | 7 | 41 | 5 | 3 | Additional file 2: Figure S1 | |||
| 6 | PF01341 | Cel. | 3088 | 3087 | 534 | 3 | 1 | 3 | 1 | Additional file 3: Figure S2 | |||||||
| 8 | PF01270 | Cel. | 5003 | 5003 | 1738 | 1 | Additional file 4: Figure S3 | ||||||||||
| 9 | PF00759 | Cel. | 2307 | 2306 | 878 | 2 | 3 | 1 | 8 | 12 | Additional file 5: Figure S4 | ||||||
| 10 | PF00331 | Xyl. | 2541 | 2535 | 1579 | 2 | 6 | 20 | 2 | Additional file 6: Figure S5 | |||||||
| 11 | PF00457 | Xyl. | 534 | 507 | 586 | 7 | 20 | 22 | Additional file 7: Figure S6 | ||||||||
| 12 | PF01670 | Cel. | 2515 | 2515 | 368 | 41 | 1 | Additional file 8: Figure S7 | |||||||||
| 18 | PF00704 | Chi. | 12,771 | 12,715 | 5929 | 5 | 1 | 51 | 2 | Additional file 9: Figure S8 | |||||||
| 19 | PF00182 | Chi. | 1683 | 1683 | 1989 | 2 | Additional file 10: Figure S9 | ||||||||||
| 30 | PF02055 | Xyl. | 1361 | 1361 | 933 | ||||||||||||
| 44 | PF12891 | Cel. | 143 | 143 | 104 | 3 | 8 | Additional file 11: Figure S10 | |||||||||
| 45 | PF02015 | Cel. | 31 | 31 | 18 | ||||||||||||
| 48 | PF02011 | Cel. | 346 | 345 | 724 | 12 | 2 | 1 | Additional file 12: Figure S11 | ||||||||
| 85 | PF03644 | Chi. | 941 | 941 | 246 | ||||||||||||
Sub. substrate targeted by the GH domain, Cel. cellulose, Xyl xylan, and Chi. chitin. #DOM. number of identified domain and #Prot. number of proteins identified in this study, CAZy number of identified domain in bacteria according to the CAZy database (http://www.cazy.org, as of March 2016)
Homo-GHs are in italics