Table 2. Fish species detected using eDNA metabarcoding (three filtrations) and gillnets during the sampling campaigns operated together in 2014 in the Aiguebelette lake.
| Fish taxa | eDNA metabarcoding | Gillnets sampling | |||
|---|---|---|---|---|---|
| Latin name | Common name | Number of reads | Detections | ||
| La | Lb | Lc | |||
| SHARED TAXA (n = 12) | |||||
| Perca fluviatilis | Perch | 162580 | 79487 | 91657 | X |
| Coregonus lavaretus | Lavaret | 125075 | 30264 | 11430 | X |
| Rutilus rutilus | Roach | 61138 | 46706 | 18619 | X |
| Esox lucius | Pike | 23428 | 30686 | 15205 | X |
| Scardinius erythrophthalmus | Rudd | 35596 | 10092 | 16013 | X |
| Squalius cephalus | Chub | 19566 | 11728 | 8608 | X |
| Abramis brama | Bream | 5129 | 4286 | 4779 | X |
| Tinca tinca | Tench | 4248 | 1290 | 2534 | X |
| Lepomis gibbosus | Pumpkinseed | 5101 | 1048 | 224 | X |
| Cyprinus carpio | Carp | 803 | 2149 | 3033 | X |
| Gobio spp. | - | 1951 | 2992 | X | |
| Salvelinus spp. | - | 5904 | X | ||
| TAXA DETECTED USING eDNA ONLY (n = 9) | |||||
| Leuciscus spp. | - | 16637 | 13139 | 167 | |
| Alburnus alburnus | Bleak | 8189 | 859 | 2702 | |
| Salaria fluviatilis | Freshwater blenny | 3678 | 3992 | 255 | |
| Salmo trutta | Trout | 19 | 912 | ||
| Micropterus sp. | - | 665 | |||
| Carassius spp. | - | 510 | |||
| Cottus spp. | - | 23 | 14 | ||
| Barbus barbus | Barbel | 12 | |||
| Barbatula sp. | - | 11 | |||
| SPECIES CAUGHT BY TRADITIONAL SAMPLING ONLY (n = 1) | |||||
| Sander lucioperca | Pikeperch | X | |||
| Total richness | 21 | 13 | |||