Table 3. Descriptive statistics of the 30 most abundant bacterial genera.
Genera | 3 days | 14 days | 28 days | 35 days | ||||
---|---|---|---|---|---|---|---|---|
P1 | MRA2 | P | MRA | P | MRA | P | MRA | |
Mannheimia | 100% | 3.1 | 100% | 24.9 | 100% | 15.6 | 100% | 15.4 |
Mycoplasma | 100% | 2.9 | 100% | 10.8 | 100% | 18.2 | 100% | 15.5 |
Moraxella | 100% | 9.1 | 100% | 18.4 | 99% | 2.6 | 100% | 4.8 |
Psychrobacter | 100% | 13.5 | 100% | 8.4 | 99% | 3.1 | 100% | 7.0 |
Pseudomonas | 100% | 4.0 | 100% | 13.1 | 100% | 5.5 | 99% | 1.2 |
Acinetobacter | 100% | 5.3 | 100% | 1.7 | 100% | 5.2 | 100% | 3.6 |
Cellulomonas | 98% | 0.2 | 84% | 0.1 | 98% | 5.2 | 100% | 5.2 |
Bacteroides | 100% | 3.3 | 99% | 1.2 | 99% | 2.3 | 100% | 4.0 |
Escherichia | 100% | 4.2 | 99% | 0.6 | 100% | 2.9 | 99% | 0.3 |
Corynebacterium | 100% | 2.5 | 99% | 0.3 | 99% | 2.1 | 100% | 2.2 |
Fusobacterium | 100% | 1.1 | 100% | 0.7 | 99% | 1.9 | 100% | 1.5 |
Pasteurella | 100% | 0.7 | 99% | 2.2 | 99% | 0.8 | 99% | 0.6 |
Pedobacter | 100% | 1.1 | 99% | 0.2 | 98% | 2.3 | 100% | 1.2 |
Streptococcus | 100% | 1.8 | 100% | 1.5 | 99% | 0.7 | 99% | 0.5 |
Serratia | 100% | 2.6 | 99% | 0.4 | 100% | 1.4 | 99% | 0.3 |
Prevotella | 100% | 1.0 | 99% | 0.4 | 99% | 0.8 | 100% | 1.8 |
Staphylococcus | 100% | 1.1 | 99% | 0.2 | 100% | 1.8 | 100% | 0.7 |
Ruminococcus | 100% | 1.3 | 99% | 0.3 | 99% | 0.7 | 100% | 1.2 |
Candidatus Blochmannia | 100% | 0.9 | 100% | 0.3 | 100% | 1.1 | 100% | 1.1 |
Porphyromonas | 100% | 1.3 | 99% | 0.2 | 99% | 0.4 | 100% | 1.4 |
Clostridium | 100% | 1.9 | 100% | 0.2 | 99% | 0.4 | 100% | 0.9 |
Blautia | 100% | 1.0 | 100% | 0.2 | 99% | 0.9 | 100% | 1.2 |
Brenneria | 100% | 0.9 | 99% | 0.8 | 96% | 0.1 | 98% | 0.5 |
Gallibacterium | 100% | 1.0 | 96% | 0.5 | 99% | 0.7 | 100% | 0.4 |
Stenotrophomonas | 99% | 0.1 | 95% | 0.1 | 99% | 1.5 | 100% | 0.4 |
Treponema | 100% | 0.9 | 100% | 0.5 | 98% | 0.2 | 99% | 0.7 |
Sphingobacterium | 100% | 0.5 | 100% | 0.5 | 99% | 0.8 | 99% | 0.4 |
Aggregatibacter | 85% | 0.1 | 99% | 1.0 | 98% | 0.1 | 97% | 0.2 |
Aerococcus | 99% | 0.7 | 97% | 0.2 | 99% | 0.5 | 100% | 0.4 |
Flavobacterium | 100% | 0.5 | 96% | 0.1 | 99% | 0.6 | 100% | 0.5 |
1P = Percentage of study calves in which the indicated genus was detected at the given age at sample collection.
2MRA = Mean relative abundance of the respective bacterial genera at the given postnatal age.