Table 2.
Sample | Reads mapping to NoV | Percentage of NoV reads | Average coverage | % of positions calleda | Length of consensus sequence (bp) | |
---|---|---|---|---|---|---|
Vs. non-rRNA reads | Vs. quality filtered reads | |||||
OU1 | 37863 | 4.01 % | 0.51 % | 590X | 100 % | 7532 |
OU2 | 88270 | 5.36 % | 1.88 % | 1318X | 99.55 % | 7525 |
OU3 | 746 | 0.04 % | 0.01 % | 11X | 90.59 % | N.A.b |
OU4 | 1420 | 2.43 % | 0.02 % | 22X | N.A. | 7657 |
SP1 | 102805 | 8.54 % | 1.78 % | 1603X | 99.91 % | 7524 |
SP2 | 9589 | 7.55 % | 0.33 % | 149X | 99.91 % | 7535 |
N.A.: not applicable
aCoverage was calculated compared to KF509946 (OU1), KC631827 (OU2), KJ196277 (OU3), JN899243.1 (OU4) and KC576909 (SP1 and SP2)
bThe alignment of OU3 produced 9 non overlapping contigs of 1744, 281, 518, 394, 434, 106, 119, 487 and 2760 nt long