Table 1B. Synaptic mRNAs differentially expressed in ASD (discovery).

Gene symbol	P-value	Fold change	Regulation	LncRNA name	Chromosome	Gene strand	Protein
SYNDIG1L	2.07E−10	2.4465995	Up	ENST00000331628	chr14	−	Synapse differentiation-inducing 1-like
SYNJ1	1.05E−09	2.0476525	Up	NM_203446	chr21	−	Synaptojanin-1 isoform b
SYCE1	2.58E−09	2.0756986	Up	ENST00000303903	chr10	−	Synaptonemal complex central element protein 1
SYCE1L	2.63E−07	2.1141472	Up	NM_001129979	chr16	+	Synaptonemal complex central element protein 1-like
SYCE2	1.76E−10	2.7053528	Up	NM_001105578	chr19	−	Synaptonemal complex central element protein 2
SYPL1	9.68E−09	2.6788418	Up	NM_006754	chr7	−	Synaptophysin-like protein 1 isoform a
SNAP25	7.44E−11	2.2339847	Up	NM_130811	chr20	+	Synaptosomal-associated protein 25 isoform
SYT15	8.02E−07	2.0689712	Up	ENST00000374325	chr10	−	Synaptotagmin XV
SYT3	7.75E−09	2.019983	Up	NM_001160329	chr19	−	Synaptotagmin-3
SDCBP	4.00E−09	3.5665565	Up	ENST00000260130	chr8	+	Syndecan binding protein (syntenin)
SYNM	7.08E−11	2.8931897	Up	NM_015286	chr15	+	Synemin isoform B
STX1A	6.43E−10	2.8111503	Up	NM_004603	chr7	−	Syntaxin-1A isoform 1
SYNDIG1	1.17E−11	2.1523478	Down	NM_024893	chr20	+	Synapse differentiation-inducing gene protein 1
SYN2	8.58E−09	2.0109727	Down	NM_133625	chr3	+	Synapsin-2 isoform IIa
SYNGR4	4.79E−06	2.0704043	Down	NM_012451	chr19	+	Synaptogyrin-4
SYNJ1	6.97E−12	2.1072302	Down	NM_003895	chr21	−	Synaptojanin-1 isoform a
SYNPO	1.59E−13	2.8214178	Down	NM_001109974	chr5	+	Synaptopodin isoform B
SYNRG	3.89E−17	2.5995717	Down	NM_198882	chr17	−	Synergin gamma isoform 3
STX2	6.70E−10	2.1167502	Down	NM_194356	chr12	−	Syntaxin-2 isoform 2

Abbreviations: ASD, autism spectrum disorder; lncRNA, long noncoding RNA; mRNA, messenger RNA.