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. 2015 Oct 27;5(10):e664. doi: 10.1038/tp.2015.163

Table 2. Detailed analysis of 6-marker haplotype block rs237917–rs2268498–rs4564970–rs237897–rs2268495–rs53576.

  Haplotype Frequency X2 P
  Likelihood ratio X2=14.78, df=6, global P-value=0.022 (0.048)
  C-C-G-A-G-A 0.283 7.483 0.006
  C-T-G-G-G-G 0.218 0.127 0.720
  T-T-G-G-A-G 0.156 3.113 0.078
  C-C-G-A-G-G 0.074 0.083 0.774
  T-T-C-G-G-G 0.071 6.681 0.010
  C-C-G-G-A-G 0.066 0.877 0.349
  T-T-G-A-G-A 0.049 0.176 0.675

Abbreviation: df, degrees of freedom. Global P-value and permutation-corrected P-value (shown in brackets) for the six-marker haplotype window. Individual tests for each haplotype showed that two haplotypes (CCGAGA and TTCGGG) differed significantly (indicated in bold) from the remaining haplotypes.