Table 2. Detailed analysis of 6-marker haplotype block rs237917–rs2268498–rs4564970–rs237897–rs2268495–rs53576.
Haplotype | Frequency | X2 | P | |
---|---|---|---|---|
Likelihood ratio X2=14.78, df=6, global P-value=0.022 (0.048) | ||||
C-C-G-A-G-A | 0.283 | 7.483 | 0.006 | |
C-T-G-G-G-G | 0.218 | 0.127 | 0.720 | |
T-T-G-G-A-G | 0.156 | 3.113 | 0.078 | |
C-C-G-A-G-G | 0.074 | 0.083 | 0.774 | |
T-T-C-G-G-G | 0.071 | 6.681 | 0.010 | |
C-C-G-G-A-G | 0.066 | 0.877 | 0.349 | |
T-T-G-A-G-A | 0.049 | 0.176 | 0.675 |
Abbreviation: df, degrees of freedom. Global P-value and permutation-corrected P-value (shown in brackets) for the six-marker haplotype window. Individual tests for each haplotype showed that two haplotypes (CCGAGA and TTCGGG) differed significantly (indicated in bold) from the remaining haplotypes.