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. 2016 Aug;22(8):1239–1249. doi: 10.1261/rna.056077.116

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© 2016 Chung et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society

This article is distributed exclusively by the RNA Society for the first 12 months after the full-issue publication date (see http://rnajournal.cshlp.org/site/misc/terms.xhtml). After 12 months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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FIGURE 5. — Phylogeny of the TUTase/PAP superfamily. Gld2 is most closely related to the genuine uridylyltransferases TUT4/TUT7. Known enzymatic activities are color-coded. (Purple) UTP preference; (green) ATP preference; (black) unknown. Bootstrap values over 90% are denoted with a star. Sequence data were downloaded from the Integrated Microbial Genomes database. The tree was calculated with PHYML using a BioNJ starting tree and SPR tree search followed by NNI branch swapping to optimize the tree. Bootstrap values were computed according to the Shimodaira–Hasegawa reestimation of log-likelihood test implemented in PHYML.