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. 2016 Jul 4;6:29124. doi: 10.1038/srep29124

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Copyright © 2016, Macmillan Publishers Limited

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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The maximum likelihood tree is generated from core SNPs using kSNP⁵⁶ for the 24 S. flexneri 4s strains sequenced, 4 standard strains of S. flexneri and 35 strains from the Shigella Genome Sequencing Consortium collection¹⁴. The 24 S. flexneri 4s strains are highlighted by black circles. The names of the 35 strains are composited by their origin number, phylogenetic group number and S. flexneri serotype.