Table 3.

Selected biological processes enriched for outliers of each statistic are given. For each statistic, biological process GO categories represented in at least five outlier regions were identified. Of those with raw permutation P value below 0.01, the categories with the highest proportion of outliers are listed here. Highly similar GO categories were omitted to minimize redundancy.

		Windows	χMD	χMD	XP-EHH	XP-EHH	FST	FST
GO ID	Description	w/ Genes	Outliers	P	Outliers	P	Outliers	P
χMD Enrichment
43524	negative regulation of neuron apoptotis	13	7	0.001	4	0.103	4	0.054
32006	regulation of TOR signaling cascade	11	5	0.008	5	0.006	3	0.095
48190	wing disc dorsal/ventral pattern formation	46	16	0.004	13	0.031	9	0.159
9582	detection of abiotic stimulus	55	18	0.002	17	0.002	13	0.016
45448	mitotic cell cycle, embryonic	28	9	0.004	1	0.977	6	0.050
7602	phototransduction	43	13	0.007	13	0.004	11	0.007
31124	mRNA 3'-end processing	30	9	0.002	5	0.201	3	0.551
6289	nucleotide-excision repair	24	7	0.003	6	0.013	4	0.102
6401	RNA catabolic process	32	8	0.009	7	0.026	3	0.507
22613	ribonucleoprotein complex biogenesis	35	8	0.006	7	0.021	7	0.011
42451	purine nucleoside biosynthetic process	44	10	0.007	6	0.209	10	0.002
6260	DNA replication	66	14	0.004	7	0.466	13	0.002
70647	prot. modif. by small prot. conjug./removal	91	19	0.002	17	0.009	16	0.004
8340	determination of adult lifespan	145	30	0.001	19	0.261	26	0.001
6310	DNA recombination	56	11	0.006	9	0.039	8	0.049
XP-EHH Enrichment
32006	regulation of TOR signaling cascade	11	5	0.008	5	0.006	3	0.095
6917	induction of apoptosis	20	5	0.251	8	0.007	6	0.029
71453	cellular response to oxygen levels	28	7	0.130	10	0.003	7	0.044
6816	calcium ion transport	31	9	0.050	11	0.003	10	0.002
7369	gastrulation	31	8	0.133	11	0.004	10	0.003
46662	regulation of oviposition	18	1	0.909	6	0.009	3	0.238
9581	detection of external stimulus	60	19	0.002	19	0.001	15	0.005
10942	positive regulation of cell death	53	9	0.619	16	0.006	13	0.013
8344	adult locomotory behavior	60	16	0.018	16	0.010	11	0.098
7291	sperm individualization	45	9	0.047	11	0.005	10	0.004
52548	regulation of endopeptidase activity	47	9	0.051	11	0.005	10	0.004
50906	detect. stimulus involved in sensory percept.	84	14	0.167	19	0.003	19	<0.001
9416	response to light stimulus	119	25	0.014	26	0.003	25	<0.001
7349	cellularization	94	16	0.064	20	0.002	18	0.002
43900	regulation of multi-organism process	81	9	0.689	17	0.009	17	0.001
FST Enrichment
35072	ecdysone-mediated induction of salivary gland cell autophagic cell death	11	3	0.622	5	0.083	6	0.005
7157	heterophilic cell-cell adhesion	25	10	0.098	11	0.019	13	<0.001
61057	peptidoglycan recog. prot. signal. pathway	10	2	0.228	3	0.052	5	<0.001
35073	pupariation	11	2	0.386	1	0.740	5	0.002
51260	protein homooligomerization	17	6	0.034	5	0.090	7	0.002
35303	regulation of dephosphorylation	13	4	0.033	4	0.029	5	0.002
6963	pos. regul. of antibact. peptide biosynthesis	21	3	0.612	3	0.565	8	0.001
43279	response to alkaloid	22	2	0.859	5	0.165	8	0.002
12502	induction of programmed cell death	31	7	0.318	11	0.006	11	0.001
43523	regulation of neuron apoptotic process	17	8	0.001	5	0.064	6	0.007
10950	pos. regulation of endopeptidase activity	17	5	0.045	5	0.039	6	0.004
45088	regulation of innate immune response	20	3	0.468	2	0.712	7	0.002
71897	DNA biosynthetic process	27	6	0.036	5	0.099	9	<0.001
50911	detection of chemical stimulus involved in sensory perception of smell	40	5	0.552	10	0.011	13	<0.001
16337	cell-cell adhesion	80	25	0.083	25	0.028	26	<0.001