Table 3.
Prediction of pathogenic proteins in A. johnsonii MB44 using MP3
| Classification | Subclassification | Pathogenic proteins (HS)a | ||
|---|---|---|---|---|
| Structure/adhesion/colonization | Fimbriae | AAU60_14105 | AAU60_12470 | AAU60_14060 |
| AAU60_14040 | AAU60_14030 | AAU60_13085 | ||
| AAU60_14155 | AAU60_14035 | |||
| LPS | AAU60_08620 | |||
| Porin | AAU60_04175 | AAU60_08060 | ||
| Membrane protein | AAU60_03545 | AAU60_00920 | AAU60_00205 | |
| AAU60_00470 | AAU60_06630 | AAU60_09350 | ||
| AAU60_01560 | AAU60_04550 | AAU60_13935 | ||
| AAU60_12465 | AAU60_06330 | |||
| Invasion | Phospholipase | AAU60_09055 | AAU60_12925 | |
| Secretion | Type I secretion system | AAU60_04920 | AAU60_04935 | AAU60_13170 |
| Type II secretion system | AAU60_10120 | AAU60_01405 | AAU60_08540 | |
| AAU60_10125 | AAU60_01400 | AAU60_08535 | ||
| ABC transporter | AAU60_06635 | AAU60_00105 | AAU60_07820 | |
| AAU60_10860 | AAU60_10765 | AAU60_05600 | ||
| AAU60_04745 | AAU60_09575 | AAU60_15185 | ||
| AAU60_14255 | AAU60_15880 | AAU60_10855 | ||
| RND transporter | AAU60_15305 | AAU60_13180 | AAU60_06585 | |
| MFS transporter | AAU60_15825 | AAU60_07305 | AAU60_08870 | |
| AAU60_07850 | AAU60_07470 | AAU60_15415 | ||
| Resistance | Drug/multi-drug resistance | AAU60_03375 | AAU60_03380 | AAU60_01105 |
| AAU60_00855 | ||||
aHS: predictions from both HMM (hidden markov model) and SVM (hybrid support vector machines) modules are in consensus