TABLE 1.
Crystallographic data and refinement statistics
mol, molecules; r.m.s.d., root mean square deviation; ESRF, European Synchrotron Radiation Facility.
CdFicSE/AA | CdFicSE/AA-ATP | CdFic | |
---|---|---|---|
Data collection | |||
Radiation source | MAX-II I911-2 | ESRF ID29 | ESRF ID23 |
Wavelength (Å) | 1.038 | 0.900 | 0.873 |
Data processing | |||
Space group | P212121 | C2 | C2221 |
Protein mol/AU | 2 | 4 | 4 |
Cell dimensions | a = 52.4 Å, b = 67.3 Å, c = 139.6 Å, α = β = γ = 90° | a = 158.1 Å, b = 60.1 Å, c = 124.8 Å, α = γ = 90°, β = 118.6° | a = 57.4, b = 157.4, c = 262.7, α = β = γ = 90° |
Resolution (Å) | 20.0–1.8 (1.9–1.8)a | 20.0–2.5 (2.6–2.5) | 20.0–3.1 (3.2–3.1) |
Completeness (%) | 98.6 (97.2) | 99.7 (100) | 99.9 (99.9) |
CC1/2b | 99.9 (77.9) | 99.9 (57.9) | 99.6 (82.1) |
Mean I/σ | 19.0 (2.3) | 16.7 (1.3) | 9.7 (1.7) |
Multiplicity | 6.6 (6.5) | 6.9 (7.2) | 8.0 (8.4) |
Rmeasc | 7.7 (95.7) | 8.2 (155.2) | 17.3 (114.0) |
Refinement | |||
Resolution (Å) | 19.1–1.8 | 19.9–2.5 | 19.9–3.1 |
Reflectionswork | 45,953 | 35,839 | 20,454 |
Reflectionstest | 1,378 | 1,076 | 1,026 |
Rworkd/Rfreee | 18.4/21.8 | 20.48/23.3 | 23.3/28.6 |
Protein atoms | 3,470 | 6,743 | 6,561 |
Water atoms | 216 | 14 | |
Glycerol/PO4/Hepes atoms | 50 | ||
ATP/Mg2+ atoms | 32 | ||
Overall B-factor (Å2) | 26.3 | 67.3 | 51.9 |
r.m.s.d. bond lengths (Å) | 0.008 | 0.010 | 0.003 |
r.m.s.d. bond angles (°) | 0.999 | 0.921 | 0.779 |
Ramachandran statistics (%) | |||
Favored | 99.0 | 98.4 | 98.3 |
Allowed | 1.0 | 1.5 | 1.7 |
Outliers | 0 | 0.1 | 0 |
Protein Data Bank code | 4X2C | 4X2D | 4X2E |
a Values in parenthesis are for the highest resolution shell.
b Percentage of correlation between intensities from random half-data sets (65).
c Rmeas = Σhkl(N(hkl)/[N(hkl) − 1])1/2Σ|Ii(hkl) − 〈/I(hkl)〉|ΣhklΣIi(hkl). Redundancy-independent R factor calculated on intensities (66).
d R = Σ‖Fobs| − |Fcalc‖Σ|Fobs| where |Fobs| and |Fcalc| are observed and calculated structure factor amplitudes, respectively.
e The Rfree value was calculated with a random 3 or 5% subset of all reflections excluded from refinement.