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. 2016 Apr 13;291(25):13286–13300. doi: 10.1074/jbc.M115.705491

TABLE 1.

Crystallographic data and refinement statistics

mol, molecules; r.m.s.d., root mean square deviation; ESRF, European Synchrotron Radiation Facility.

CdFicSE/AA CdFicSE/AA-ATP CdFic
Data collection
    Radiation source MAX-II I911-2 ESRF ID29 ESRF ID23
    Wavelength (Å) 1.038 0.900 0.873

Data processing
    Space group P212121 C2 C2221
    Protein mol/AU 2 4 4
    Cell dimensions a = 52.4 Å, b = 67.3 Å, c = 139.6 Å, α = β = γ = 90° a = 158.1 Å, b = 60.1 Å, c = 124.8 Å, α = γ = 90°, β = 118.6° a = 57.4, b = 157.4, c = 262.7, α = β = γ = 90°
    Resolution (Å) 20.0–1.8 (1.9–1.8)a 20.0–2.5 (2.6–2.5) 20.0–3.1 (3.2–3.1)
    Completeness (%) 98.6 (97.2) 99.7 (100) 99.9 (99.9)
    CC1/2b 99.9 (77.9) 99.9 (57.9) 99.6 (82.1)
    Mean I 19.0 (2.3) 16.7 (1.3) 9.7 (1.7)
    Multiplicity 6.6 (6.5) 6.9 (7.2) 8.0 (8.4)
    Rmeasc 7.7 (95.7) 8.2 (155.2) 17.3 (114.0)

Refinement
    Resolution (Å) 19.1–1.8 19.9–2.5 19.9–3.1
    Reflectionswork 45,953 35,839 20,454
    Reflectionstest 1,378 1,076 1,026
    Rworkd/Rfreee 18.4/21.8 20.48/23.3 23.3/28.6
    Protein atoms 3,470 6,743 6,561
    Water atoms 216 14
    Glycerol/PO4/Hepes atoms 50
    ATP/Mg2+ atoms 32
    Overall B-factor (Å2) 26.3 67.3 51.9
    r.m.s.d. bond lengths (Å) 0.008 0.010 0.003
    r.m.s.d. bond angles (°) 0.999 0.921 0.779

Ramachandran statistics (%)
    Favored 99.0 98.4 98.3
    Allowed 1.0 1.5 1.7
    Outliers 0 0.1 0
    Protein Data Bank code 4X2C 4X2D 4X2E

a Values in parenthesis are for the highest resolution shell.

b Percentage of correlation between intensities from random half-data sets (65).

c Rmeas = Σhkl(N(hkl)/[N(hkl) − 1])1/2Σ|Ii(hkl) − 〈/I(hkl)〉|ΣhklΣIi(hkl). Redundancy-independent R factor calculated on intensities (66).

d R = Σ‖Fobs| − |Fcalc‖Σ|Fobs| where |Fobs| and |Fcalc| are observed and calculated structure factor amplitudes, respectively.

e The Rfree value was calculated with a random 3 or 5% subset of all reflections excluded from refinement.