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. 2016 Apr 27;291(25):13375–13393. doi: 10.1074/jbc.M115.679027

TABLE 1.

Nucleotide sequences of the synthetic primers used in the PCR amplifications to generate the deleted and mutant variants of PHOX2B

The enzyme restriction sites used for cloning are underlined.

Construct name Forward primer (5′–3′) Reverse primer (5′-3′)
PHOX2B Nter CGGAATTCCAATGTATAAAATGGAATATTC GCGAATTCTCACTTGCGCTTCTCGTTG
PHOX2B Nter + HD CGGAATTCCAATGTATAAAATGGAATATTC GCGAATTCTCACTCCTGCTTGCGAAAC
PHOX2B HD CGGAATTCAGCAGCGGCGCATCC GCGAATTCTCACTCCTGCTTGCGAAAC
PHOX2B HD + Cter CGGAATTCAGCAGCGGCGCATCC ATGAATTCGGCTTCCGCCGCAGG
PHOX2B Cter CGGAATTCTTCGCAAGCAGGAGCGC ATGAATTCGGCTTCCGCCGCAGG
PHOX2B ΔNLS1 CTCAACGAGACCACTTTCACCAGTGCCCAG AAAGTGGTCTCGTTGAGGCCGCCGTG
PHOX2B ΔNLS2 GTTCCAGCAGGAGCGCGCAGCG TCCTGCTGGAACCACACCTGGACTCGC
PHOX2B Δ106–147 ACCACTTTCAACCGCCGCGCCAAG CGGTTGAAAGTGGTGCGGATGCG
External primers (for ΔNLS1, ΔNLS2, Δ NLS1-2 and Δ106–147) CACAAGCTTGCTGCGGAATTGTACC CTCCATTCGCCCCGCAGCTG
GAL4 BD-/ VP16 AD-PHOX2B WT GGGGTACCATGTATAAAATGGAATATTC CCGGTACCGGCTTCCGCCGCAGG
GAL4 BD-/ VP16 AD-Nter GGGGTACCATGTATAAAATGGAATATTC CCGGTACCTCACTTGCGCTTCTCGTTG
GAL4 BD-/ VP16 AD-Nter + HD GGGGTACCATGTATAAAATGGAATATTC CCGGTACCTCACTTGCGCTTCTCGTTG
GAL4 BD-/ VP16 AD-HD GGGGTACCCAGCGGCGCATCC CCGGTACCTCACTTGCGCTTCTCGTTG
GAL4 BD-/ VP16 AD-HD + Cter GGGGTACCCAGCGGCGCATCC CCGGTACCGGCTTCCGCCGCAGG
GAL4 BD-/ VP16 AD-Cter GGGGTACCCGCAAGCAGGAGCGC CCGGTACCGGCTTCCGCCGCAGG
GAL4 BD-/ VP16 AD-PHOX2A GCGGCCGCCGGGCCGATGGACTACTCCTACC TTGCGGCCGCCTAGAAGAGATTGGTCTTCAGGGC