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. 2016 Jul 6;6:29219. doi: 10.1038/srep29219

Table 1. False positive CNVRs caused by genome assembly errors.

False positive CNVRs UMD3.1Chr Start End Btau_4.6.1Chr Overlapped gene Overlapped with QTLs
FP_CNVR1 chr1 83,218,713 83,238,102 chrY EPHB3 Body weight (yearling)
FP_CNVR2 chr2 55,587,169 55,598,367 chrUn    
FP_CNVR3 chr4 45,054,839 45,072,215 chrX RELN Stillbirth (direct), Calving ease (maternal)
FP_CNVR4 chr4 75,028,395 75,104,623 chrUn GTPBP10  
FP_CNVR5 chr5 22,514,133 22,563,988 chrY   Intramuscular fat, Shear force, Longissimus muscle area, Fat thickness at the 12th rib, Kidney fat weight, Carcass weight, Body weight (slaughter), Chest width, Length of productive life, Milk fat percentage, Milk fat yield (daughter deviation), Body condition score, Somatic cell score (DYD), Conformation score, Rump angle
FP_CNVR6 chr17 15,448,739 15,477,125 chrX   Marbling score
FP_CNVR7 chr17 25,056,695 25,119,996 chrY PRAME  
FP_CNVR8 chr17 50,746,686 50,962,760 chrY   Trans-16-C18:1 fatty acid content, Clinical mastitis (DYD), Shear force, Somatic cell score (DYD)
FP_CNVR9 chr17 51,115,979 51,433,906 chrY ZNF280B, HFSY2, PRAME Trans-16-C18:1 fatty acid content, Clinical mastitis (DYD), Shear force, Metabolic body weight, Dry matter intake, Abomasum displacement, Body weight (weaning)