Table 6.

CpG island SNP allele effects for AKAP12. Example result from “Samy et al. SOM, Tumor Suppressor Gene Analysis,” which provides all results of minor (non-hg19) SNP allele effects for 43 tumor suppressor genes. Note that “Vulnerable SNP fraction” and “CpG % DN¹ change” are represented for all 43 tumor suppressor genes in Figure 5.

Gene: AKAP12	CpG_16	CpG_132	CpG_25	CpG_42	Total Across All CpG Islands
SNPs that could create a CpG	0	12	3	6	21
Total SNPs	5	51	14	15	85
Vulnerable SNP fraction	0	0.235294	0.214286	0.4	0.247059
Original CpG count	16	132	25	42	215
CpG DN1 range	16–16	132–144	25–28	42–48	215–236
CpG % DN1 change	0	0.090909	0.12	0.142857	0.097674
CpG island nucleotide coverage (size)	227	1267	290	451	2235
Vulnerable SNPs, fraction of CpG island size	0	0.009471	0.010345	0.013304	0.009396

¹Dinucleotide