Table 10.
Detailed analysis of RARE in 6 genes known to respond to VA status
| Gene ID and Location | Chromosome Index | RARE Motif | Distance to Gene | Motif Direction | Region of DNA |
|---|---|---|---|---|---|
| lrat, chromosome 3 DNA anti-sense strand (−) | 82949816 | DR8 | 45844 | Anti-sense | Upstream of gene |
| 82953173 | DR8 | 49201 | Sense | Upstream of gene | |
| 82996879 | DR8 | 92907 | Anti-sense | Upstream of gene | |
| 82971302 | DR5 | 67330 | Sense | Upstream of gene | |
| 82967915 | DR2 | 63943 | Sense | Upstream of gene | |
| 82972031 | DR0 | 68059 | Sense | Upstream of gene | |
| dhrs3, chromosome 4 DNA sense strand (+) | 144894881 | DR8 | Anti-sense | Intron | |
| 144898374 | DR5 | Sense | Intron | ||
| 144873589 | DR2 | 19237 | Sense | Upstream of gene | |
| 144961926 | DR2 | 34708 | Sense | Downstream of gene | |
| 144899328 | DR1 | Anti-sense | Intron | ||
| 144944809 | DR0 | 17591 | Sense | Downstream of gene | |
| 144948438 | DR0 | 21220 | Sense | Downstream of gene | |
| Mgp, chromosome 6 DNA anti-sense strand (−) | 136860020 | DR2 | 12415 | Anti-sense | Upstream of gene |
| 136869018 | DR1 | 3417 | Anti-sense | Upstream of gene | |
| 136884827 | DR0 | 9023 | Anti-sense | Downstream of gene | |
| 136900034 | DR0 | 24230 | Anti-sense | Downstream of gene | |
| angpt2, chromosome 8 DNA anti-sense strand (−) | 18687334 | DR5 | 2928 | Sense | Downstream of gene |
| 18723223 | DR2 | Anti-sense | Intron | ||
| 18751784 | DR2 | 10223 | Anti-sense | Upstream of gene | |
| 18658582 | DR1 | 31680 | Anti-sense | Downstream of gene | |
| 18689848 | DR1 | 414 | Anti-sense | Downstream of gene | |
| 18774561 | DR1 | 33000 | Sense | Upstream of gene | |
| 18816277 | DR1 | 74716 | Anti-sense | Upstream of gene | |
| 18695286 | DR0 | Anti-sense | Intron | ||
| 18769633 | DR0 | 28072 | Sense | Downstream of gene | |
| 18779102 | IR0 | 37541 | Sense/anti-sense | Downstream of gene | |
| rbp7, chromosome 4 DNA anti-sense strand (−) | 149450825 | DR8 | Anti-sense | Intron | |
| 149463185 | DR8 | 8208 | Anti-sense | Upstream of gene | |
| 149431573 | DR2 | 18113 | Anti-sense | Downstream of gene | |
| 149464578 | DR1 | 9601 | Anti-sense | Upstream of gene | |
| 149462743 | DR0 | 7766 | Sense | Upstream of gene | |
| mki67, chromosome 7 DNA anti-sense strand (−) | 135963069 | DR8 | 246691 | Anti-sense | Upstream of gene |
| 136216758 | DR8 | 500380 | Anti-sense | Upstream of gene | |
| 136771227 | DR8 | 1054849 | Anti-sense | Upstream of gene | |
| 136251024 | DR5 | 534646 | Anti-sense | Upstream of gene | |
| 136461059 | DR5 | 744681 | Sense | Upstream of gene | |
| 136560751 | DR5 | 844373 | Sense | Upstream of gene | |
| 136637986 | DR5 | 921608 | Sense | Upstream of gene | |
| 135802380 | DR2 | 86002 | Sense | Upstream of gene | |
| 135978900 | DR2 | 262522 | Anti-sense | Upstream of gene | |
| 136441382 | DR2 | 725004 | Sense | Upstream of gene | |
| 136544626 | DR2 | 828248 | Sense | Upstream of gene | |
| 136670230 | DR2 | 953852 | Anti-sense | Upstream of gene | |
| 136711388 | DR2 | 995010 | Anti-sense | Upstream of gene | |
| 136743036 | DR2 | 1026658 | Sense | Upstream of gene | |
| 136817972 | DR2 | 1101594 | Anti-sense | Upstream of gene | |
| 135788600 | DR1 | 72222 | Sense | Upstream of gene | |
| 135814575 | DR1 | 98197 | Sense | Upstream of gene | |
| 135897296 | DR1 | 180918 | Anti-sense | Upstream of gene | |
| 135915535 | DR1 | 199157 | Anti-sense | Upstream of gene | |
| 135956189 | DR1 | 239811 | Sense | Upstream of Gene | |
| 136132050 | DR1 | 415672 | Anti-sense | Upstream of gene | |
| 136137176 | DR1 | 420798 | Anti-sense | Upstream of gene | |
| 136292546 | DR1 | 576168 | Sense | Upstream of gene | |
| 136330137 | DR1 | 613759 | Sense | Upstream of gene | |
| 136409785 | DR1 | 693407 | Anti-sense | Upstream of gene | |
| 136814240 | DR1 | 1097862 | Anti-sense | Upstream of gene | |
| 135687597 | DR0 | 2190 | Sense | Downstream of gene | |
| 135791844 | DR0 | 75466 | Anti-sense | Upstream of gene | |
| 135795717 | DR0 | 79339 | Sense | Upstream of gene | |
| 135870969 | DR0 | 154591 | Anti-sense | Upstream of gene | |
| 135886470 | DR0 | 170092 | Anti-sense | Upstream of gene | |
| 136032369 | DR0 | 315991 | Sense | Upstream of gene | |
| 136040808 | DR0 | 324430 | Anti-sense | Upstream of gene | |
| 136112258 | DR0 | 395880 | Anti-sense | Upstream of gene | |
| 136149013 | DR0 | 432635 | Anti-sense | Upstream of gene | |
| 136445138 | DR0 | 728760 | Anti-sense | Upstream of gene | |
| 136792870 | DR0 | 1076492 | Sense | Upstream of gene | |
| 136506955 | IR0 | 790577 | Sense/anti-sense | Upstream of gene | |
| 136527792 | IR0 | 811414 | Sense/anti-sense | Upstream of gene |