Table 2.

Number and percentage of 6 RARE motif variants in whole mouse genome vs. percentage of hits found in genes responsive to VA status in this study

RARE Motif	Consensus Sequence	Number of Hits Genome Wide	% of Hits Genome Wide	% of Hits Identified in 67 Genes	% of Hits Identified in 6 Selected VA-Responsive Genes*
DR0	rgktcargktca	28256	26.76%	27.88%	28.82%
DR1	rgktcanrgktca	16678	25.35%	20.05%	17.01%
DR2	rgktcannrgktca	27577	21.13%	29.72%	28.12%
DR5	rgktcannnnnrgktca	9306	9.86%	10.14%	9.49%
DR8	rgktcannnnnnnnrgktca	8383	12.68%	8.29%	8.55%
IR0	rgktcatgamcy	7854	4.23%	3.92%	8.01%
Total		98054	100.01%	100.00%	100.00%

Shown are the DNA sequences of the retinoic acid response element (RARE) queries and the number and percentage of hits returned; r = A/G; k = G/T; y = C/T; m = A/C; n = A/G/C/T.

^*See Table 10.