Fig. 4.

Illustration of the numbers and relative frequencies of antigen gene alleles found using high throughput multi-locus sequencing of genes encoding CD8 antigens in the three components of the Muguga cocktail vaccine (Muguga, Serengeti and Kiambu 5) and the Marikebuni stock. Alleles are denoted by different fill patterns, the black shaded allele representing the most abundant allele in the Muguga isolate. The results for Tp2 (Tp2F) are based on forward sequence reads only. The National Center for Biotechnology Information (NCBI, USA) sequence read archive (SRA) accession number for these sequence data is SRP065583.