Table 3.
Comparison of assembly statistics of commonly compared genomes of naked mole-rat, guinea pig, mouse, and human.
Data from http://www.ncbi.nlm.nih.gov/genome/
| Naked mole-rat | Guinea pig | Mouse | Human | |||
|---|---|---|---|---|---|---|
| Genome | hetGla1 | hetGla2 | Cell Rep | cavPor3 | GRCm38.p4 | GRCh38.ph |
| Assembly size (Gb) | 2.66 | 2.62 | 2.75 | 2.72 | 2.8 | 3.23 |
| Sequencing coverage | 92x | 90x | 92x | 6.8x | N/A | N/A |
| # Contigs | 273,990 | 114,653 | N/A | 61,604 | 796 | 1460 |
| Contig N50 (Kb) | 19.3 | 47.8 | 19.3 | 80.6 | 32,273 | 56,413 |
| # Scaffolds | 39,266 | 4229 | N/A | 3144 | 293 | 801 |
| Scaffold N50 (Mb) | 1585 | 20,533 | 21,307 | 27,942 | 52,589 | 59,364 |
| Unfilled gaps (Mb) | 214 | 303 | N/A | 60 | 79 | 161 |
Note that the naked mole-rat genome assemblies are less contiguous (lower contig N50) and more gapped (higher gap percentage)