TABLE 1.
Epidemiological information for 14 samples collected during HPAI H7N7 outbreak
| Site | Sample | RNA copies/μl | Mean depth of coverage | Sample typea | Animal (farm type) | Collection date | Province | No. of birds | Depopulation date |
|---|---|---|---|---|---|---|---|---|---|
| Farm 1, shed 2 | 4527-11 | 1.24E+05 | 19,354 | Pool of 10 TS | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 |
| 4527-12 | 9.22E+07 | 36,772 | Pool of 10 TS | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 | |
| 4541-7 | 1.04E+06 | 24,696 | Organ pool* | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 | |
| 4541-32 | 2.49E+07 | 53,292 | Kidney | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 | |
| Farm 1, shed 4 | 4541-8 | 5.24E+05 | 34,018 | Organ pool* | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 |
| 4541-33 | 4.98E+03 | 42,661 | Kidney | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 | |
| Farm 1, shed 5 | 4541-9 | 3.93E+04 | 23,390 | Organ pool* | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 |
| 4541-34 | 4.32E+04 | 58,893 | Kidney | Laying hen (industrial farm) | 13 Aug 2013 | Ferrara | 128,000 | 27 Aug 2013 | |
| Farm 2 | 4603-1 | 2.89E+05 | 43,810 | Pool of 10 TS | Laying hen (industrial farm) | 19 Aug 2013 | Bologna | 584,900 | 8 Sept 2013 |
| Farm 3 | 4678 | 7.88E+05 | 19,893 | Organ pool* | Meat turkey (industrial farm) | 21 Aug 2013 | Ferrara | 19,850 | 27 Aug 2013 |
| Farm 4 | 4774 | 2.30E+08 | 31,804 | Organ pool** | Laying hen (industrial farm) | 27 Aug 2013 | Bologna | 121,705 | 8 Sept 2013 |
| Farm 5 | 5091 | 1.21E+07 | 24,510 | Organ pool* | Backyard flock | 2 Sept 2013 | Ferrara | 3 | 5 Sept 2013 |
| Farm 6 | 5051-1 | 5.27E+07 | 46,615 | Trachea | Pullets (industrial farm) | 3 Sept 2013 | Bologna | 98,200 | 8 Sept 2013 |
| 5051-3 | 1.02E+08 | 48,562 | Trachea | Pullets (industrial farm) | 3 Sept 2013 | Bologna | 98,200 | 8 Sept 2013 |
a
TS, tracheal swabs; *, pool of organs from two animals; **, pool of organs from three animals.