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. 2016 Jun 24;90(14):6401–6411. doi: 10.1128/JVI.00538-16

TABLE 2.

Number of reads showing a 0- to 9-nucleotide insertiona

Nucleotide insertion size (no. of nucleotides) No. of reads
Shed 5
 Shed 4
 Shed 2
4541-34 4541-9 4541-8 4541-33 4527-11 4527-12 4541-7 4541-32
0 0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 0 0
2 0 0 0 0 0 0 0 0
3 0 1 0 0 0 0 0 0
4 0 0 0 1 0 0 0 0
5 0 1 0 0 0 0 0 0
6 23,509 14,861 0 591 11 0 1 4
7 0 0 4 18 5 3 5 27
8 0 0 0 0 1 0 0 5
9 2 1 16,587 13,700 6,660 13,725 4,439 22,929
a

Compared to the sequence of an H7 LPAI strain (CCAAAGAGAAGA) at the HA cleavage site of eight samples collected from three different sheds of the index case.