Table 3.
Credible QTLs, their locations and effects for ten agronomic traits
| Trait | QTLa | Chr. | LOD | R2(%) | Peak position | Nearest Marker | Intervalb | Additive | Year |
|---|---|---|---|---|---|---|---|---|---|
| MSL | qMsl2-7 | 2 | 7.24–17.32 | 7.27–18.70 | 184.71 | 2_598551866 | 179.8–187.0 | – | 2009,2010,2011,2013 |
| qMsl7-4 | 7 | 4.07–4.71 | 1.93–3.07 | 46.01 | 7_542100185 | 44.7–49.2 | + | 2009,2010,2011 | |
| qMsl7-5 | 7 | 23.23–39.79 | 25.47–52.72 | 151.51 | 7_249275418 | 150.8–153.0 | + | 2009,2010,2011,2012 | |
| SMS | qSms1-1 | 1 | 3.83–7.11 | 1.27–2.37 | 29.01 | M_208488_950 | 28.2–30.9 | + | 2009,2012,2013 |
| qSms2-1 | 2 | 8.52–10.52 | 3.01–3.34 | 69.01 | 2_426554428 | 68.8–71.5 | + | 2012,2013 | |
| qSms2-4 | 2 | 8. 21–10.28 | 2.96–3.41 | 79.01 | M_223185_603 | 76.3–80.8 | + | 2009,2013 | |
| qSms2-7 | 2 | 54.54–67.58 | 72.76–82.22 | 125.21 | 2HL_22930294 | 124.6–125.6 | + | 2009,2010,2011,2012,2013 | |
| qSms4-4 | 4 | 7.03–7.39 | 2.35–3.35 | 148.41 | 4HS_28564347 | 146.7–151.3 | + | 2009,2011 | |
| qSms4-5 | 4 | 4.97–5.02 | 1.65–2.83 | 154.01 | 4HS_9277108 | 151.3–156.2 | + | 2012,2013 | |
| SPD | qSpd2-4 | 2 | 20.37–20.63 | 4.38–3.99 | 94.41 | M_230635_804 | 93.7–95.8 | + | 2009,2012 |
| qSpd2-6 | 2 | 39.52–39.98 | 16.85–23.94 | 184.11 | 2_598509820 | 181.8–184.6 | + | 2009,2010,2011,2012,2013 | |
| qSpd4-1 | 4 | 30.52–30.83 | 1.72–2.92 | 145.51 | 4HS_32009949 | 140.8–153.8 | + | 2009,2010,2011,2012 | |
| qSpd7-3 | 7 | 31.09–31.17 | 46.97–57.06 | 143.81 | 7_379313804 | 143.4–145.1 | – | 2009,2010,2011 | |
| SP | qSp5-1 | 5 | 2.55–6.00 | 6.18–20.32 | 13.31 | 5_6313908 | 10.8–20.9 | + | 2011,2012,2013 |
| SLP | qSlp2-6 | 2 | 5.62–32.59 | 16.70–64.20 | 128.71 | 2HL_34260490 | 127.8–129.6 | – | 2009,2011,2012,2013 |
| qslp4-2 | 4 | 3.40–5.15 | 4.72–5.05 | 143.71 | 4_28741355 | 139.6–146.0 | + | 2010,2011 | |
| TGW | qTgw2-1 | 2 | 28.10–48.43 | 44.03–61.78 | 125.21 | 2HL_22930294 | 124.7–126.0 | + | 2009,2013 |
| qTgw2-2 | 2 | 24.08–49.64 | 43.45–58.63 | 127.01 | 2HL_22930005 | 126.2–127.7 | + | 2010,2011,2012 | |
| qTgw5-1 | 5 | 2.69–3.32 | 1.39–1.56 | 2.91 | 5_54803 | 0–8.4 | + | 2011,2013 | |
| qTgw7-1 | 7 | 6.54–18.45 | 3.02–16.22 | 64.81 | 7HL_28107982 | 62.3–65.8 | + | 2010,2011,2013 | |
| qTgw7-3 | 7 | 5.47–10.51 | 3.00–10.99 | 181.11 | 7_100916612 | 180.0–183.3 | + | 2009,2011 | |
| qTgw7-4 | 7 | 10.50–13.16 | 5.42–6.64 | 186.21 | 7_74542989 | 185.9–187.2 | + | 2010,2013 | |
| GP | qGp2-2 | 2 | 5.65–33.76 | 11.70–57.24 | 128.71 | 2HL_34260490 | 128.0–129.6 | + | 2009,2010,2013 |
| GS | qGs2-2 | 2 | 4.83–5.64 | 1.83–4.73 | 85.91 | M_207663_1931 | 85.0–87.7 | + | 2010,2011 |
| qGs2-4 | 2 | 21.68–58.64 | 41.14–79.50 | 128.71 | 2HL_34260490 | 128–130.6 | + | 2010,2011,2012,2013 | |
| GWP | qGwp2-1 | 2 | 3.75–5.59 | 6.68–11.72 | 133.01 | 2_534686550 | 129.6–137.4 | + | 2010,2011,2013 |
| qGwp3-3 | 3 | 2.73–5.64 | 6.01–6.85 | 174.31 | 3HL_45008254 | 173.1–177.3 | ± | 2010,2013 | |
| qGwp7-3 | 7 | 7.72–21.59 | 11.85–40.82 | 151.51 | 7_249275418 | 150.0–151.9 | + | 2010,2012 | |
| qGwp7-4 | 7 | 4.35–13.38 | 7.11–28.85 | 157.11 | M_231959_191 | 154.9–158.7 | + | 2012,2013 | |
| GWS | qGws2-3 | 2 | 6.48–9.34 | 12.44–16.83 | 133.01 | 2_534686550 | 130.0–136.3 | – | 2011,2012,2013 |
| qGws7-8 | 7 | 2.92–4.06 | 4.08–6.50 | 186.71 | 7_92359522 | 185.4–193.3 | + | 2012,2013 |
aCredible QTLs which was detected more than one year
b2-LOD confidence interval which was determined by finding the region on both sides of a QTL peak that corresponds to a decrease of 2 LOD score