Table 1. Categories of initial assemblies and classification of novel lncRNAs from B. napus post infection with S. sclerotiorum.
Class code | After initial assemblies | After final processing | Description | ||
---|---|---|---|---|---|
Transcript no. | % | Transcript no. | % | ||
= | 43,714 | 70.42 | - | - | Complete match of intron chain |
C | 393 | 0.63 | - | - | Contained by a reference transcript |
J | 4,127 | 6.64 | 173 | 5.43 | Potentially novel isoform (Atleast one splice junction is shared with a reference transcript) |
O | 579 | 0.93 | 76 | 2.38 | Generic exonic overlap with a reference transcript |
U | 12,542 | 20.20 | 2,821 | 88.68 | Intergenic transcript |
X | 716 | 1.15 | 111 | 3.48 | Exonic overlap with reference on the opposite strand |
Total | 62,071 | 100% | 3,181 | 100% |