Table 3. Cryptosporidium and Giardia PCR and sequencing results.

This excludes 11 samples that were positive for G. duodenalis by microscopy, but negative by PCR.

PCR result	Number positive by microscopy; number positive by PCR (% of PCR positive samples)	GP60 subtype (number of samples)
Cryptosporidium species sequencing results
Cryptosporidium spp.	11; 38
C. hominis	5; 13 (34.2%)	IaA14R3 (1)
		IaA16R6 (3)
		IdA17 (1)
		IfA19G1 (1)
		Negative (6)
		Seq poor (1)
C. meleagridis	3; 9 (23.7)	Not done
C. parvum	3; 8 (21.1)	IIeA7G1 (4)
		Negative (4)
C. canis	0; 5 (13.2)	Not done
C. suis	0; 1 (2.6)	Not done
C. ubiquitum	0; 1 (2.6)	Not done
C. hominis and C. parvum mixture	0; 1 (2.6)	Not done
G. duodenalis sequencing results
G. duodenalis	47; 132
G. duodenalis assemblage B	43; 63 (80.3)	Assemblage B (n = 17)
G. duodenalis assemblage A	3; 14 (12.9)	Not done
G. duodenalis assemblage A and B	1; 6 (5.3)	Not done
G. duodenalis	0; 2 (1.5)	Not done