Table 3. Cryptosporidium and Giardia PCR and sequencing results.
PCR result | Number positive by microscopy; number positive by PCR (% of PCR positive samples) | GP60 subtype (number of samples) |
---|---|---|
Cryptosporidium species sequencing results | ||
Cryptosporidium spp. | 11; 38 | |
C. hominis | 5; 13 (34.2%) | IaA14R3 (1) |
IaA16R6 (3) | ||
IdA17 (1) | ||
IfA19G1 (1) | ||
Negative (6) | ||
Seq poor (1) | ||
C. meleagridis | 3; 9 (23.7) | Not done |
C. parvum | 3; 8 (21.1) | IIeA7G1 (4) |
Negative (4) | ||
C. canis | 0; 5 (13.2) | Not done |
C. suis | 0; 1 (2.6) | Not done |
C. ubiquitum | 0; 1 (2.6) | Not done |
C. hominis and C. parvum mixture | 0; 1 (2.6) | Not done |
G. duodenalis sequencing results | ||
G. duodenalis | 47; 132 | |
G. duodenalis assemblage B | 43; 63 (80.3) | Assemblage B (n = 17) |
G. duodenalis assemblage A | 3; 14 (12.9) | Not done |
G. duodenalis assemblage A and B | 1; 6 (5.3) | Not done |
G. duodenalis | 0; 2 (1.5) | Not done |