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. 2016 May 3;32(14):2227–2229. doi: 10.1093/bioinformatics/btw220

Table 1.

Mean and SD of errors (error = estimated ancestry-specific allele frequency – true ancestry-specific allele frequency) for 56 003 SNPs, grouped by true ancestry-specific allele frequency bins for African, European (Eur.), and Native American (Nat. Am.) ancestries

True Ancestry-Specific Allele Frequency Bins
Ancestry Statistic (0–0.2] (0.2–0.4] (0.4–0.6] (0.6–0.8] (0.8–1]
African Mean −0.0011 −0.0003 −0.0004 0.0004 −0.0004
African SD 0.0065 0.0185 0.0233 0.0186 0.0118
Eur. Mean −0.0015 −0.0004 −0.0007 −0.0010 <0.0001
Eur. SD 0.0077 0.0209 0.0249 0.0220 0.0122
Nat. Am. Mean −0.0004 −0.0017 0.0021 0.0048 0.0007
Nat. Am. SD 0.0083 0.0235 0.0238 0.0257 0.0118