Table 1. Number of fragments within each ensemble.
Sequence | # of structures | Loop (%) | A-form (%) |
---|---|---|---|
UACG | 3674 | 9 | 37 |
UCCG | 6673 | 3 | 67 |
UGCG | 5872 | 0 | 61 |
UUCG | 3969 | 15 | 17 |
GAAA | 12 908 | 16 | 8 |
GAGA | 7596 | 10 | 27 |
GCAA | 7835 | 14 | 23 |
GCGA | 10 946 | 7 | 17 |
GGAA | 12 395 | 3 | 24 |
GGGA | 16 764 | 0.7 | 46 |
GUAA | 8100 | 6 | 15 |
GUGA | 11 432 | 10 | 10 |
The fraction of loops and A-form helices is calculated considering all structures with RMSD < 0.6 from the consensus loop/ideal helix.